DRSC/TRiP Functional Genomics Resources

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Protein Alignment sens and Gfi1

DIOPT Version :9

Sequence 1:NP_524818.1 Gene:sens / 45328 FlyBaseID:FBgn0002573 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_036698.1 Gene:Gfi1 / 24388 RGDID:2680 Length:423 Species:Rattus norvegicus


Alignment Length:491 Identity:153/491 - (31%)
Similarity:200/491 - (40%) Gaps:146/491 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 RDFALTPEKEHELQMNNNNENSKQDYQEQDEDMPLNLSTKERITSDDSNRDQYHSSSNNSSRSSS 167
            |.|.:..:|.|..   :...:...||..:.|.:|:                  ...::..:.|:.
  Rat     3 RSFLVKSKKAHSY---HQPRSPGPDYSLRLETVPV------------------PGRADGGAVSAG 46

  Fly   168 SSEV---EQLHPMTSLNVTPPPLSAVNLKSSSTPQQQRQRSQGNIIWSPASMCERSARREQYGLK 229
            .|::   |:|.|.:.|...|.       ::|::|..           ...|:|:.|:..|.|   
  Rat    47 ESKMEPRERLSPESQLTEAPD-------RASASPNS-----------CEGSVCDPSSEFEDY--- 90

  Fly   230 MEEQGDEEEHQVDPIVRKFKYERRTASISSLQSPISSLSAPASNAVQDLEFEVAQQQLYAHRSAF 294
                                          .:.|..|:| |||........:.||......:...
  Rat    91 ------------------------------WRPPSPSVS-PASEKSLCRSLDEAQPYTLPFKPYA 124

  Fly   295 MAGLTGNNLELLTQH------------LKLKSEQ-PQQQQQQHRIKDEQQQDNR------SAAAL 340
            .:||.|::|..|.|.            |.|..|: .:..:...|...||.....      |..|.
  Rat   125 WSGLAGSDLRHLVQSYRQCSALERSAGLSLFCERGAESGRPAARYGSEQAAGGAGAGQPGSCGAA 189

  Fly   341 MNLVAAAEFGY-------MRNQHQQPQ-------QQQQQQLHHQQQPQQHQHQQ----------- 380
            ....:|...|.       .....::|.       |.:..:||..:........:           
  Rat   190 SGATSAGGLGLYGDFAPAAAGLFERPSTAAGRLYQDRGHELHADKSVGVKVESELLCTRLLLGGG 254

  Fly   381 -----------QHPDSTATDVARRSSSSSSYQGENEEKRSG---------------RNFQCKQCG 419
                       ..|......|.|..|.:..:..|...|..|               |:|.||.||
  Rat   255 SYKCIKCSKVFSTPHGLEVHVRRSHSGTRPFACEMCGKTFGHAVSLEQHKAVHSQERSFDCKICG 319

  Fly   420 KSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCTVCLKAFSQSSNL 484
            |||||||||||||||||||||||||||||||||||||||||:||||||||||.||.|||||||||
  Rat   320 KSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL 384

  Fly   485 ITHMRKHTGYKPFGCHLCDQSFQRKVDLRRHRESRH 520
            |||.|||||:|||||.||.:.||||||||||||::|
  Rat   385 ITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHRETQH 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sensNP_524818.1 zf-C2H2 413..435 CDD:278523 19/21 (90%)
C2H2 Zn finger 415..435 CDD:275368 18/19 (95%)
COG5048 423..>497 CDD:227381 68/73 (93%)
zf-H2C2_2 428..452 CDD:290200 23/23 (100%)
C2H2 Zn finger 443..463 CDD:275368 18/19 (95%)
zf-H2C2_2 455..480 CDD:290200 21/24 (88%)
C2H2 Zn finger 471..491 CDD:275368 16/19 (84%)
C2H2 Zn finger 499..516 CDD:275368 12/16 (75%)
Gfi1NP_036698.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..102 26/171 (15%)
SNAG domain. /evidence=ECO:0000250 1..20 4/19 (21%)
Required for interaction with RELA. /evidence=ECO:0000250 141..258 14/116 (12%)
COG5048 <255..417 CDD:227381 100/161 (62%)
C2H2 Zn finger 258..279 CDD:275368 3/20 (15%)
C2H2 Zn finger 287..307 CDD:275368 3/19 (16%)
zf-H2C2_2 299..324 CDD:290200 9/24 (38%)
C2H2 Zn finger 315..335 CDD:275368 18/19 (95%)
C2H2 Zn finger 343..363 CDD:275368 18/19 (95%)
zf-H2C2_2 355..380 CDD:290200 21/24 (88%)
C2H2 Zn finger 371..391 CDD:275368 16/19 (84%)
C2H2 Zn finger 399..418 CDD:275368 14/18 (78%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166354404
Domainoid 1 1.000 57 1.000 Domainoid score I10624
eggNOG 1 0.900 - - E33208_3BCNN
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2013
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.740

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