DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sens and Gfi1

DIOPT Version :9

Sequence 1:NP_524818.1 Gene:sens / 45328 FlyBaseID:FBgn0002573 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_001254550.1 Gene:Gfi1 / 14581 MGIID:103170 Length:489 Species:Mus musculus


Alignment Length:557 Identity:171/557 - (30%)
Similarity:221/557 - (39%) Gaps:176/557 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 LWPQ-----FLLSSATALGTPLTPMTPKSPASVVLGQ------RDRDFALTPEKEHELQMNNNNE 122
            :|.|     .|||:        .|..|:.|||...|:      ::|   ..|....:||..|:..
Mouse     1 MWRQRASGGLLLSA--------LPSAPEFPASDDQGKPGGPLCQER---AAPPPGRQLQHENSEY 54

  Fly   123 NSKQDYQEQDEDMPLNLSTKERITSDDSNRDQYHSSSNNSSRSSSSSEVEQLHPMTSLNVTPPPL 187
            ...|.:.::...||.:...|.:      ....||...                       :|.|.
Mouse    55 PRVQTFVQRLTTMPRSFLVKSK------KAHSYHQPR-----------------------SPGPD 90

  Fly   188 SAVNLKSSSTPQQQRQRSQGNIIWSPASMCERSARREQYGLKMEEQGDEEEHQVDPIVRKFKYER 252
            .::.|::...|    .|::|..:.:..|..|...|     |..:.|..|..            :|
Mouse    91 YSLRLETVPAP----GRAEGGAVSAGESKMEPRER-----LSPDSQLTEAP------------DR 134

  Fly   253 RTASISSLQS--------------PISSLSAPASNAVQDLEFEVAQQQLYAHRSAFMAGLTGNNL 303
            .:||.:|.:.              |.|...:|||........:.||......:....:||.|::|
Mouse   135 ASASPNSCEGSVCDPCSEFEDFWRPPSPSVSPASEKSLCRSLDEAQPYTLPFKPYAWSGLAGSDL 199

  Fly   304 ELLTQH------------LKLKSEQPQQQ-QQQHRIKDEQQQDNRSA--------------AALM 341
            ..|.|.            |.|..|:..:. :...|...||......|              ||.:
Mouse   200 RHLVQSYRQCSALERSAGLSLFCERGSEPGRPAARYGPEQAAGGAGAGQPGSCGVAGGATSAAGL 264

  Fly   342 NL---VAAAEFGYMRNQHQQPQQQQQQQLHHQQQPQQHQHQQQHPDSTATDV------------- 390
            .|   .|.|..|.    :::|.....:..      |.|.|:.....|....|             
Mouse   265 GLYGDFAPAAAGL----YERPSTAAGRLY------QDHGHELHADKSVGVKVESELLCTRLLLGG 319

  Fly   391 ---------------------ARRSSSSS----------------SYQGENEEKRSGRNFQCKQC 418
                                 .|||.|.:                |.:.........|:|.||.|
Mouse   320 GSYKCIKCSKVFSTPHGLEVHVRRSHSGTRPFACEMCGKTFGHAVSLEQHKAVHSQERSFDCKIC 384

  Fly   419 GKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCTVCLKAFSQSSN 483
            ||||||||||||||||||||||||||||||||||||||||||:||||||||||.||.||||||||
Mouse   385 GKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSN 449

  Fly   484 LITHMRKHTGYKPFGCHLCDQSFQRKVDLRRHRESRH 520
            ||||.|||||:|||||.||.:.||||||||||||::|
Mouse   450 LITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHRETQH 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sensNP_524818.1 zf-C2H2 413..435 CDD:278523 19/21 (90%)
C2H2 Zn finger 415..435 CDD:275368 18/19 (95%)
COG5048 423..>497 CDD:227381 68/73 (93%)
zf-H2C2_2 428..452 CDD:290200 23/23 (100%)
C2H2 Zn finger 443..463 CDD:275368 18/19 (95%)
zf-H2C2_2 455..480 CDD:290200 21/24 (88%)
C2H2 Zn finger 471..491 CDD:275368 16/19 (84%)
C2H2 Zn finger 499..516 CDD:275368 12/16 (75%)
Gfi1NP_001254550.1 COG5048 <321..483 CDD:227381 98/161 (61%)
C2H2 Zn finger 324..345 CDD:275368 2/20 (10%)
C2H2 Zn finger 353..373 CDD:275368 1/19 (5%)
zf-H2C2_2 365..390 CDD:290200 10/24 (42%)
C2H2 Zn finger 381..401 CDD:275368 18/19 (95%)
zf-H2C2_2 394..418 CDD:290200 23/23 (100%)
C2H2 Zn finger 409..429 CDD:275368 18/19 (95%)
zf-H2C2_2 421..446 CDD:290200 21/24 (88%)
C2H2 Zn finger 437..457 CDD:275368 16/19 (84%)
C2H2 Zn finger 465..484 CDD:275368 14/18 (78%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167850705
Domainoid 1 1.000 57 1.000 Domainoid score I10849
eggNOG 1 0.900 - - E33208_3BCNN
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2013
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.740

Return to query results.
Submit another query.