DRSC/TRiP Functional Genomics Resources

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Protein Alignment sens and gfi1b

DIOPT Version :10

Sequence 1:NP_524818.1 Gene:sens / 45328 FlyBaseID:FBgn0002573 Length:541 Species:Drosophila melanogaster
Sequence 2:XP_002936223.1 Gene:gfi1b / 100489910 XenbaseID:XB-GENE-944426 Length:343 Species:Xenopus tropicalis


Alignment Length:446 Identity:142/446 - (31%)
Similarity:190/446 - (42%) Gaps:136/446 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 RDFALTPEKEHELQMNNNNENSKQDYQEQDEDMPLNL------------STKERITSDDSNRDQY 155
            |.|.:..:|.|....:.        |.|:...:.|:|            ..:....|.|.| |:.
 Frog     3 RSFLVKSKKTHTYHQHR--------YVEEQPVVGLDLLATSYYAHCAEFPVEPPAFSTDRN-DKV 58

  Fly   156 HSSSNNSSRSS--SSSEVEQLHPMTSLNVTPPPLSAVNLKSSSTPQQQRQRS------QGNIIWS 212
            |:..|.::..:  ...:..:..|..|.:::|.....:.| ||..|.:....|      ..|..| 
 Frog    59 HTPENTTTEETDIDPGDSREKIPFISRSISPNAFQGIAL-SSMRPSKPYDPSPLSAFYAQNFSW- 121

  Fly   213 PASMCERSARREQYGLKMEEQGDEEEHQVDPIVRKFKYERRTASISSLQSPISSLSAPA---SNA 274
                   ......||.|      :...|:.|              |.||:.|:..|.|.   |::
 Frog   122 -------ETLHSTYGFK------QIPSQIHP--------------SMLQNSINLYSCPPTLDSDS 159

  Fly   275 VQDLEFEVA---QQQLYAHRSAFMAGLTGNNLELLTQHLKLKSEQPQQQQQQHRIKDEQQQDNRS 336
            ...:.:.::   :...|..........|.:.||:   |::                    :.:..
 Frog   160 DHPINYSMSYSPKMDSYHCVKCSKVFSTSHGLEV---HVR--------------------RSHSG 201

  Fly   337 AAALMNLVAAAEFGYMRNQHQQPQQQQQQQLHHQQQPQQH--QHQQQHPDSTATDVARRSSSSSS 399
            ....:..:....||                  |....:||  .|.|:                  
 Frog   202 TRPFVCNICGKSFG------------------HAVSLEQHLNVHSQE------------------ 230

  Fly   400 YQGENEEKRSGRNFQCKQCGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHT 464
                       |:|:||.|||:|||||||||||||||||||||||:|||||||||||||||||||
 Frog   231 -----------RSFECKMCGKTFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHT 284

  Fly   465 GEKPHKCTVCLKAFSQSSNLITHMRKHTGYKPFGCHLCDQSFQRKVDLRRHRESRH 520
            |||||||.||.||||||||||||.|||||:|||.|.||.:.||||||||||||::|
 Frog   285 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFSCDLCGKGFQRKVDLRRHRENQH 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sensNP_524818.1 zf-C2H2 413..435 CDD:395048 18/21 (86%)
C2H2 Zn finger 415..435 CDD:275368 17/19 (89%)
zf-C2H2 441..463 CDD:395048 20/21 (95%)
C2H2 Zn finger 443..463 CDD:275368 18/19 (95%)
zf-H2C2_2 455..480 CDD:463886 22/24 (92%)
C2H2 Zn finger 471..491 CDD:275368 16/19 (84%)
zf-H2C2_2 483..506 CDD:463886 16/22 (73%)
C2H2 Zn finger 499..516 CDD:275368 12/16 (75%)
gfi1bXP_002936223.1 COG5048 <76..337 CDD:227381 125/359 (35%)
C2H2 Zn finger 178..199 CDD:275368 4/43 (9%)
PHA00733 <204..252 CDD:177301 23/94 (24%)
C2H2 Zn finger 207..227 CDD:275368 5/37 (14%)
C2H2 Zn finger 235..255 CDD:275368 17/19 (89%)
C2H2 Zn finger 263..283 CDD:275368 18/19 (95%)
zf-H2C2_2 275..300 CDD:463886 22/24 (92%)
C2H2 Zn finger 291..311 CDD:275368 16/19 (84%)
C2H2 Zn finger 319..336 CDD:275368 12/16 (75%)

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