DRSC/TRiP Functional Genomics Resources

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Protein Alignment sens and gfi1b

DIOPT Version :9

Sequence 1:NP_524818.1 Gene:sens / 45328 FlyBaseID:FBgn0002573 Length:541 Species:Drosophila melanogaster
Sequence 2:XP_002936223.1 Gene:gfi1b / 100489910 XenbaseID:XB-GENE-944426 Length:343 Species:Xenopus tropicalis


Alignment Length:446 Identity:142/446 - (31%)
Similarity:190/446 - (42%) Gaps:136/446 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 RDFALTPEKEHELQMNNNNENSKQDYQEQDEDMPLNL------------STKERITSDDSNRDQY 155
            |.|.:..:|.|....:.        |.|:...:.|:|            ..:....|.|.| |:.
 Frog     3 RSFLVKSKKTHTYHQHR--------YVEEQPVVGLDLLATSYYAHCAEFPVEPPAFSTDRN-DKV 58

  Fly   156 HSSSNNSSRSS--SSSEVEQLHPMTSLNVTPPPLSAVNLKSSSTPQQQRQRS------QGNIIWS 212
            |:..|.::..:  ...:..:..|..|.:::|.....:.| ||..|.:....|      ..|..| 
 Frog    59 HTPENTTTEETDIDPGDSREKIPFISRSISPNAFQGIAL-SSMRPSKPYDPSPLSAFYAQNFSW- 121

  Fly   213 PASMCERSARREQYGLKMEEQGDEEEHQVDPIVRKFKYERRTASISSLQSPISSLSAPA---SNA 274
                   ......||.|      :...|:.|              |.||:.|:..|.|.   |::
 Frog   122 -------ETLHSTYGFK------QIPSQIHP--------------SMLQNSINLYSCPPTLDSDS 159

  Fly   275 VQDLEFEVA---QQQLYAHRSAFMAGLTGNNLELLTQHLKLKSEQPQQQQQQHRIKDEQQQDNRS 336
            ...:.:.::   :...|..........|.:.||:   |::                    :.:..
 Frog   160 DHPINYSMSYSPKMDSYHCVKCSKVFSTSHGLEV---HVR--------------------RSHSG 201

  Fly   337 AAALMNLVAAAEFGYMRNQHQQPQQQQQQQLHHQQQPQQH--QHQQQHPDSTATDVARRSSSSSS 399
            ....:..:....||                  |....:||  .|.|:                  
 Frog   202 TRPFVCNICGKSFG------------------HAVSLEQHLNVHSQE------------------ 230

  Fly   400 YQGENEEKRSGRNFQCKQCGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHT 464
                       |:|:||.|||:|||||||||||||||||||||||:|||||||||||||||||||
 Frog   231 -----------RSFECKMCGKTFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHT 284

  Fly   465 GEKPHKCTVCLKAFSQSSNLITHMRKHTGYKPFGCHLCDQSFQRKVDLRRHRESRH 520
            |||||||.||.||||||||||||.|||||:|||.|.||.:.||||||||||||::|
 Frog   285 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFSCDLCGKGFQRKVDLRRHRENQH 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sensNP_524818.1 zf-C2H2 413..435 CDD:278523 18/21 (86%)
C2H2 Zn finger 415..435 CDD:275368 17/19 (89%)
COG5048 423..>497 CDD:227381 68/73 (93%)
zf-H2C2_2 428..452 CDD:290200 22/23 (96%)
C2H2 Zn finger 443..463 CDD:275368 18/19 (95%)
zf-H2C2_2 455..480 CDD:290200 22/24 (92%)
C2H2 Zn finger 471..491 CDD:275368 16/19 (84%)
C2H2 Zn finger 499..516 CDD:275368 12/16 (75%)
gfi1bXP_002936223.1 COG5048 <76..337 CDD:227381 125/359 (35%)
C2H2 Zn finger 178..199 CDD:275368 4/43 (9%)
PHA00733 <204..252 CDD:177301 23/94 (24%)
C2H2 Zn finger 207..227 CDD:275368 5/37 (14%)
C2H2 Zn finger 235..255 CDD:275368 17/19 (89%)
C2H2 Zn finger 263..283 CDD:275368 18/19 (95%)
zf-H2C2_2 275..300 CDD:372612 22/24 (92%)
C2H2 Zn finger 291..311 CDD:275368 16/19 (84%)
C2H2 Zn finger 319..336 CDD:275368 12/16 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 57 1.000 Domainoid score I10703
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2013
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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