DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sens and gfi1b

DIOPT Version :9

Sequence 1:NP_524818.1 Gene:sens / 45328 FlyBaseID:FBgn0002573 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_001258770.1 Gene:gfi1b / 100151531 ZFINID:ZDB-GENE-091118-129 Length:334 Species:Danio rerio


Alignment Length:332 Identity:135/332 - (40%)
Similarity:162/332 - (48%) Gaps:81/332 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   228 LKMEEQGDEEEHQVDPIVRK--------FKYERRTASISSLQSPISSLSAPASNAVQDLEFEVAQ 284
            |:.:|....|..||||:.|.        .|.||..      ..||.||  |.........|.:::
Zfish    42 LEPKECKSPERPQVDPVTRPSHRDPYDFIKCEREP------DCPIPSL--PELPTATRRPFYISE 98

  Fly   285 QQL------------YAHRSA---------FMAGLTGNNLELLTQHLKLKSE-QPQQQQQQHRIK 327
            .||            :.|..|         |...|..:...|...|||..:| ||......:   
Zfish    99 PQLAEFPPYYKSSFGWDHGPASYQEFRHMGFSPSLLHHASSLYGAHLKQSAEPQPLDCSTHY--- 160

  Fly   328 DEQQQDNRSAAALMNLVAAAEFG---YMRNQHQQPQQQQ----QQQLHHQQQPQQHQ--HQQQHP 383
              ....|.......:.|.:...|   ::|..|...:..:    ::...|....:||.  |.|:  
Zfish   161 --SPSSNTYHCITCDKVFSTSHGLEVHVRRSHSGTRPFECSICRKSFGHAVSLEQHMNVHSQE-- 221

  Fly   384 DSTATDVARRSSSSSSYQGENEEKRSGRNFQCKQCGKSFKRSSTLSTHLLIHSDTRPYPCQYCGK 448
                                       |:|:||.|||:|||||||||||||||||||||||||||
Zfish   222 ---------------------------RSFECKMCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGK 259

  Fly   449 RFHQKSDMKKHTYIHTGEKPHKCTVCLKAFSQSSNLITHMRKHTGYKPFGCHLCDQSFQRKVDLR 513
            |||||||||||||||||||||||.||.||||||||||||.|||||:|||||.:|.:.||||||||
Zfish   260 RFHQKSDMKKHTYIHTGEKPHKCQVCCKAFSQSSNLITHSRKHTGFKPFGCEICSKGFQRKVDLR 324

  Fly   514 RHRESRH 520
            ||.||:|
Zfish   325 RHHESQH 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sensNP_524818.1 zf-C2H2 413..435 CDD:278523 18/21 (86%)
C2H2 Zn finger 415..435 CDD:275368 17/19 (89%)
COG5048 423..>497 CDD:227381 69/73 (95%)
zf-H2C2_2 428..452 CDD:290200 23/23 (100%)
C2H2 Zn finger 443..463 CDD:275368 19/19 (100%)
zf-H2C2_2 455..480 CDD:290200 22/24 (92%)
C2H2 Zn finger 471..491 CDD:275368 16/19 (84%)
C2H2 Zn finger 499..516 CDD:275368 11/16 (69%)
gfi1bNP_001258770.1 TonB_N 18..93 CDD:292650 16/58 (28%)
COG5048 <126..326 CDD:227381 109/233 (47%)
C2H2 Zn finger 169..190 CDD:275368 3/20 (15%)
C2H2 Zn finger 198..218 CDD:275368 3/19 (16%)
zf-H2C2_2 210..235 CDD:290200 12/53 (23%)
C2H2 Zn finger 226..246 CDD:275368 17/19 (89%)
C2H2 Zn finger 254..274 CDD:275368 19/19 (100%)
zf-H2C2_2 266..291 CDD:290200 22/24 (92%)
C2H2 Zn finger 282..302 CDD:275368 16/19 (84%)
C2H2 Zn finger 310..326 CDD:275368 10/15 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 59 1.000 Domainoid score I10685
eggNOG 1 0.900 - - E33208_3BCNN
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2013
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.810

Return to query results.
Submit another query.