DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lsp2 and PPO3

DIOPT Version :9

Sequence 1:NP_001287042.1 Gene:Lsp2 / 45326 FlyBaseID:FBgn0002565 Length:701 Species:Drosophila melanogaster
Sequence 2:NP_524760.1 Gene:PPO3 / 44513 FlyBaseID:FBgn0261363 Length:683 Species:Drosophila melanogaster


Alignment Length:637 Identity:165/637 - (25%)
Similarity:280/637 - (43%) Gaps:84/637 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 WSVMYDKHEEYVVGLVRLFYFAKNWETFQHVVYWARQHVNKQLFVYAVTIASLFRDDMQGVVLPA 161
            :|:....|.:....|:.:|...:..:..|.|..:||..||..||.||:::|.|.|.|.:.:.|||
  Fly    81 FSIFLKSHRKMASHLIEIFTKMQTVDELQSVAVYARDRVNPVLFNYALSVALLHRPDTKDLELPA 145

  Fly   162 HYEIHPWSYFDSQALEWAEHYKMHGFHHVKQMDNIYNVVIRTNYSNVHGSLNYDHDLAYYLEDVG 226
            ..:..|..:.||:.|   ...:...| .|::......||....|:  ...|:.:|.|.|:.||:|
  Fly   146 FAQTFPDRFIDSKML---RSMREESF-VVERSAARLPVVSSVKYT--ASDLDVEHRLWYFREDLG 204

  Fly   227 FNAFYYYFNLDYPFWTKGGEEHVLNKDRRGELYLYVHWQLLARWYLERLSHDLGEVPAF-NMYVP 290
            .|..:::::|.||.  :..:..:::|||||||:.|:|.|::||:..||||:.:..|..| |:..|
  Fly   205 VNLHHWHWHLVYPI--EAPDRSIVDKDRRGELFYYMHQQIIARYNAERLSNHMARVQPFNNLDEP 267

  Fly   291 TESGYASNL------RTYYGVPQWHRENHHSFYHEHNYEH--IEHVEMYTQRVMDWIHK------ 341
            ...||...:      |.|  .|::...........:|...  |:.::.:.:|:.:.||:      
  Fly   268 IAEGYFPKMDSLVASRAY--PPRFDNTRLSDVDRPNNQLRVGIDDMKRWRERIYEAIHQGYVLDT 330

  Fly   342 -NEKF---DVETINVLGNIIQGNADSVDKKFYGSLDKLYRFIVNEGHHYGHGDESFPGLFMHYDT 402
             |||.   |.:.|::|||||:.:..:.:...||....:...::...|...:....:.|:.....|
  Fly   331 NNEKIVLDDAKGIDILGNIIEASDLTPNSTLYGDFHNMGHILIAYSHDPTNKHLEYAGVMGDAST 395

  Fly   403 SMRDPIFYEVYKTIVSHYWHLMETYPEYHKKDYAFEGVHIDAVHMPES-----LTTYFEHFDSDI 462
            :|||||||:.:..|.:.:.........|.|::.:|..|.::::.:...     |||:::..|.|:
  Fly   396 AMRDPIFYKWHAFIDNMFQEHKRLLSPYEKQELSFPDVRVESIQVESQGQVNRLTTFWQESDVDM 460

  Fly   463 SNAVNVEPAVEGSADPLYTFGRNSHYKGSSYVIKARQQRLNHKPFEFTLDV--TSDKAQDAVVKV 525
            |..::..|              ..|       :.||...|.|..|.:|:.|  :|:..:...|::
  Fly   461 SRGLDFVP--------------RGH-------VLARFTHLQHHEFSYTIKVENSSEATRYGYVRI 504

  Fly   526 FIGPKYDEHGHEIPLEHNYQNFFELEHFKVHLEAGVNHIKRASGDFSFWVNDRTTYLELYQKLMD 590
            |:.||.|:....:.||.......||:.|.|.:..|.:.|.|.|.:.|..:....|:         
  Fly   505 FLAPKLDDRNAPMLLEQQRLMMVELDKFVVTMPPGSHTITRNSTESSVTIPFERTF--------- 560

  Fly   591 ATNSDYKFKLDQSEAHCGVPNRMMLPRGKKGGQVFQFFYMVYPYHQPEVAQFTGYDPVVSCGVGH 655
             .|.|...:|......||.|..|::|:|:..|..|:.|.||..|.:.:|.|     .|..||...
  Fly   561 -RNLDKLEELQNFLCGCGWPQHMLIPKGRPEGLRFELFVMVSNYEEDKVDQ-----TVADCGCSI 619

  Fly   656 GSRYV--------DALPFGFPFNRPVKHD----YYFDVHNFKFVDVKIFHRD 695
            .:.|.        |....||||:|..:..    ..|...|...|:|.|.|.|
  Fly   620 AASYCGLRDRLYPDRKSMGFPFDRKPRRGSEILENFLTPNMCAVEVIITHED 671

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lsp2NP_001287042.1 Hemocyanin_N 33..156 CDD:281684 18/58 (31%)
Hemocyanin_M 163..420 CDD:278784 73/275 (27%)
Hemocyanin_C 430..693 CDD:281685 69/281 (25%)
PPO3NP_524760.1 Hemocyanin_N 19..140 CDD:281684 18/58 (31%)
Hemocyanin_M 150..413 CDD:278784 73/272 (27%)
Hemocyanin_C 422..669 CDD:281685 69/282 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45470653
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11511
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

Return to query results.
Submit another query.