DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lsp2 and Lsp1beta

DIOPT Version :9

Sequence 1:NP_001287042.1 Gene:Lsp2 / 45326 FlyBaseID:FBgn0002565 Length:701 Species:Drosophila melanogaster
Sequence 2:NP_001285556.1 Gene:Lsp1beta / 33274 FlyBaseID:FBgn0002563 Length:789 Species:Drosophila melanogaster


Alignment Length:792 Identity:271/792 - (34%)
Similarity:401/792 - (50%) Gaps:145/792 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 AVALLATLGQA-------KHLDSKVADKDFLMKQKFMYQIL----------QHIYQDDVFTTPFG 58
            |:||||.||.|       .| :.|:|||.|||||||:::|:          .||.|.:.|.  |.
  Fly     4 AIALLACLGLAAAASFHQTH-EVKIADKAFLMKQKFLFEIVYRVEDPLMFEDHIKQGEKFY--FE 65

  Fly    59 GSYVEYKPWEHVADYVHPEM-LEHFFELWQ-HQPFTDDMVWSVMYDKHEEYVVGLVRLFYFAKNW 121
            .||           |.|.:| ::.|||.:: |........:..:...|.:...||...||:||:|
  Fly    66 ESY-----------YTHYDMYMKKFFEAYKAHALLPKGEFFGALVMSHAKQARGLFNFFYYAKDW 119

  Fly   122 ETFQHVVYWARQHVNKQLFVYAVTIASLFRDDMQGVVLPAHYEIHPWSYFDSQALEWAE------ 180
            |||...|.|||.|||:.:||||:|:|.:.|:|..|::||:.|||.|..:|:|:.:..||      
  Fly   120 ETFAANVAWARMHVNEGMFVYALTMAVIHRNDFHGLMLPSIYEIFPQFFFNSKFVFEAEKFDYEM 184

  Fly   181 --------------HYKMHGFHH------------------------------------------ 189
                          :||.:|:.:                                          
  Fly   185 WMKMTMYEKEYMDVYYKTNGYDYSTMYRSSDYTYMKDFKTWQWWKLMGLGEHWYTEDKFILRENI 249

  Fly   190 ------------VKQMDNIYNVVIRTNYSNVHGSLNYDHDLAYYLEDVGFNAFYYYFNLDYPFWT 242
                        :|.:...|..|..|...|::   |.:..|:|:.||:|:||::||.|:||.|:.
  Fly   250 YEFNQETKWLSMMKDVKKFYMPVDYTRDLNLY---NKESKLSYFTEDLGWNAYWYYLNMDYSFFL 311

  Fly   243 KGGEEHVLNKDRRGELYLYVHWQLLARWYLERLSHDLGEVPAFNMYVPTESGYASNLRTYYGVPQ 307
            .|....:.| |||||.:||...|||:|:|:|||||..||:|.|:.|...|.||...|..|.|:..
  Fly   312 DGNTFDLKN-DRRGEWWLYNVHQLLSRYYMERLSHGFGEIPEFSWYQQIEMGYDPQLIYYNGIGY 375

  Fly   308 WHRENHHSFYHEHNYEHIEHVEMYTQRVMDWI----------HKNEKFDVETINVLGNIIQGNAD 362
            ..|:|::......||:.::.:..:.:|:.:.:          |..:....|.|..:||::|||.|
  Fly   376 SFRKNYYEMETYANYDMLDKITGFLKRIHNIVEMGYYKTADGHTIDLRKPEAIEFIGNMLQGNVD 440

  Fly   363 SVDKKFYGSLDKLYRFIVNEGHHYGHGDESFPGLFMHYDTSMRDPIFYEVYKTIVSHYWHLMETY 427
            ::||.||.....|......:..:|..  :.:|.:.::::|.||||::|..||:|...|:..|...
  Fly   441 AMDKMFYQFWYMLAHMYFADADYYQM--DVYPNVMLNFETMMRDPMYYMFYKSIAQVYFQFMHYL 503

  Fly   428 PEYHKKDYAFEGVHIDAVHMPESLTTYFEHFDSDISNAVNVEPAVEGSADPLYTFGRNSHYKGSS 492
            |:|.|:.....||.:..|.:.: |||||:..|.|::|.:|         |.:.       ::...
  Fly   504 PKYTKEQLLMPGVTMKNVEVSD-LTTYFDLVDFDVTNMLN---------DKMI-------FQDGK 551

  Fly   493 YV----IKARQQRLNHKPFEFTLDVTSDKAQDAVVKVFIGPKYDEHGHEIPLEHNYQNFFELEHF 553
            :|    :.|||.|||||||.:|..:.|:|.:..|::.|:|||:||.|..|.|..|..||.|::.|
  Fly   552 FVWDMSLFARQMRLNHKPFTYTYTIESEKVEKVVIRAFLGPKFDEFGKVISLAENRMNFMEIDEF 616

  Fly   554 KVHLEAGVNHIKRASGDFSFWVNDRTTYLELYQKLMDATNSDYKFKLDQSEAHCGVPNRMMLPRG 618
            ...|:||.|.|.|.|.:|.:.|.|||||.|||...|.|.:..|.|.||.||.|||.|:|::||.|
  Fly   617 YYELKAGTNKITRKSSEFYWTVKDRTTYTELYYYTMMAFDGKYDFPLDISEPHCGFPDRLVLPMG 681

  Fly   619 KKGGQVFQFFYMVYPYHQPEVAQFTGYDPVVSCGVGHGSRYVDALPFGFPFNRPVKHDYYFDVHN 683
            .:.|...|.|:||.||..|...||:.:|...|||:|.|:||||:||||:||:|.: .:|.|.|.|
  Fly   682 WQKGMPMQMFFMVVPYVAPAHEQFSTFDYTYSCGIGSGARYVDSLPFGYPFDRAI-DEYEFFVPN 745

  Fly   684 FKFVDVKIFHRD 695
            ..|.||.|:|.|
  Fly   746 MYFKDVSIYHAD 757

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lsp2NP_001287042.1 Hemocyanin_N 33..156 CDD:281684 48/134 (36%)
Hemocyanin_M 163..420 CDD:278784 90/340 (26%)
Hemocyanin_C 430..693 CDD:281685 112/266 (42%)
Lsp1betaNP_001285556.1 Hemocyanin_N 32..154 CDD:281684 48/134 (36%)
Hemocyanin_M 161..496 CDD:278784 90/340 (26%)
Hemocyanin_C 505..755 CDD:281685 112/267 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45470635
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_28IXN
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG27073
OrthoDB 1 1.010 - - D130404at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11511
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3797
76.860

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