DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lin and lins1

DIOPT Version :9

Sequence 1:NP_524815.1 Gene:lin / 45325 FlyBaseID:FBgn0002552 Length:858 Species:Drosophila melanogaster
Sequence 2:XP_021333377.1 Gene:lins1 / 798262 ZFINID:ZDB-GENE-101019-1 Length:604 Species:Danio rerio


Alignment Length:844 Identity:150/844 - (17%)
Similarity:267/844 - (31%) Gaps:363/844 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 DTDLHSQPESAHDEVDRAAKLPNLLTLDTTNGNGSHASSRSNCLQATTATSIDDMLEFEQSLTRQ 184
            :.|.||.....|     |...|:|.:.|.       ||..|:|:|  |.|:.||          .
Zfish     5 ELDFHSVFGLLH-----AGSAPSLSSEDL-------ASRISSCVQ--TVTNTDD----------T 45

  Fly   185 CLCGVSERTLRKPFQSHYSQDTNGQKRIAYLREWPTNKLLQFLSNLQLLFDIYLKQNAKGFICTR 249
            ||                                          :|.|:..:..:..|..|....
Zfish    46 CL------------------------------------------SLSLIESVISRLAAHSFTADA 68

  Fly   250 IMDVCDALIR--NDHKLIDEIIVLAGYENSYVQFLAGRVLAAFLVIAKQELNDEWLQK------- 305
            .:...|.:.|  .:..|:.:::.|...::..|..|:.:.::.:::   :||....|..       
Zfish    69 AVYYQDVIRRLFTERNLMAKLVSLLRCQDKLVSHLSAKCMSVYVI---KELGIAGLSSCMWTDSC 130

  Fly   306 --IVDQLFNFEQLDQ-----AAVQKIHFSLD-------IIKRIVEWKDMEIHPLDDDWMASANST 356
              ::::..:..:||.     .||.|.....|       ::.|::...|..|             |
Zfish   131 AAVLERSVSGCELDSCLWSVTAVIKGVLKADMGQNKREVLTRLLSALDSSI-------------T 182

  Fly   357 SAASSVVPLSTEASVSYMHFPVQEQPLATNYFALQFREDTEGERETGQEAPDNRDRHRRHFGEDM 421
            ....:::||||:                                                     
Zfish   183 HLYRNLLPLSTK----------------------------------------------------- 194

  Fly   422 NVAYEPHPAPQSTTMPSGCHVVTLTDSESFDTTHLKCITIQKLEHKWPTLVKNMSELMAPTHQDA 486
                :||                        :|.:||:            .|:|||         
Zfish   195 ----DPH------------------------STDMKCV------------CKSMSE--------- 210

  Fly   487 AEHCVLNFLQLWE--NIISVKANLSIDETRPYYAQLDKFELLLSHSLSCTVYKQMLCLFNEALC- 548
                   |::|.|  |...::..||....|..:.:......::...:...|.|::|.|..:::. 
Zfish   211 -------FIELLEALNAARLRHGLSSSAQRLSFTRCSSLLHVIRTDVEYVVKKRVLLLLKKSVLR 268

  Fly   549 -YGSTLALQDM---------LPEETCKLAHQIVCHVR-GFRILESLPRRQPDNMVSLIGYNGKPM 602
             .|...||.|:         |.|:...:|..::..|. |:  |:.:|.:.   ..|..|      
Zfish   269 RAGDDWALGDVQSASGEDLSLTEDLLSMADTVLQEVNAGW--LKEVPVKA---QASFFG------ 322

  Fly   603 VYANGTITLAHAAQSGDSEEDGAPLDLIEMDKTLLQKMVLLVLKSIAVTVKEIRSDSSDSSIDST 667
                           |:.:.||.    ::.|..:|:.:.|::|||:.:.:|.:....|...|::.
Zfish   323 ---------------GNCDVDGT----MKKDDVILRAVSLILLKSLEIKMKSLGQQGSAGEIEAQ 368

  Fly   668 DYDAFQDMMLIERSIRDVLSKLETFIKQ--TLEFHPECHFSKILIHLFDDQDDHLIEAMVCTLDV 730
            .|                |::|..|:::  :|:.|..|..|.    ||.:|||.::||....:.:
Zfish   369 QY----------------LTELMLFLQRHVSLDSHRCCWVSA----LFAEQDDDMMEATNTLMAL 413

  Fly   731 ---------TSGISFRNNAFPELVAMLNPVYTFLEFLKMTSNSSDLLLDLLVSNETCFLLYLLRL 786
                     .||:         .|...||...|:..|:..|....:|||.|:|:|||||.|.:|.
Zfish   414 YLYQKRSCSDSGV---------CVWGFNPHCLFILLLRSLSFDHSVLLDFLISSETCFLEYFVRY 469

  Fly   787 LKYIRMNWTMFVHS-----------------------------CHTFGMGS-------------- 808
            ||.:..:||....|                             |.....|:              
Zfish   470 LKLLCQDWTGLCRSSQHIEDGGGDAKRGSDLSIPASSAAAAVPCGESATGNQVETALVSRLVDYG 534

  Fly   809 ----------------------AMLDEAMGVLIRLRLQISRLVSRQLYPYDISPVLRLLESCES 850
                                  ::|.:.:..|:.||..:|||.:|.|:||:.|.:|:||...||
Zfish   535 SSDESEEADNVDCGASVMLVEESLLGKVLACLMDLRTAVSRLHNRGLFPYNPSSLLKLLNGVES 598

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
linNP_524815.1 LINES_N 442..801 CDD:291366 83/412 (20%)
LINES_C 814..849 CDD:291367 14/34 (41%)
lins1XP_021333377.1 LINES_N 150..477 CDD:317138 94/507 (19%)
LINES_C 562..597 CDD:317139 14/34 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170580219
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_2CN0S
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007032
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR16057
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.930

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