DRSC/TRiP Functional Genomics Resources

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Protein Alignment lin and lins1

DIOPT Version :9

Sequence 1:NP_524815.1 Gene:lin / 45325 FlyBaseID:FBgn0002552 Length:858 Species:Drosophila melanogaster
Sequence 2:XP_002939313.3 Gene:lins1 / 100486288 XenbaseID:XB-GENE-957262 Length:721 Species:Xenopus tropicalis


Alignment Length:450 Identity:97/450 - (21%)
Similarity:171/450 - (38%) Gaps:140/450 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   434 TTMPS----GCHVVTLTDSESFDTTHLKCITIQKLEHKWPTLVKNMSELMA---PTH-----QDA 486
            |.||.    .|....|...|:.....:..:.:|.|:   ||..:..|.|::   .||     .|.
 Frog   161 TVMPCLSTLICVFKGLLRDENLQQGDILSVLLQPLD---PTFERFCSSLLSDVGTTHCQTSALDP 222

  Fly   487 AEHCVLNFLQLWENIISVKANLSIDETRPYYAQLDKFELLLSHSLSCTVYKQMLCLFNEALCYGS 551
            ...|.|:.|                        ||..|||::..:.   ||:.|     .||:  
 Frog   223 ESSCCLSCL------------------------LDLMELLIALRIK---YKRSL-----PLCH-- 253

  Fly   552 TLALQDMLPEETCKLAHQIVCHVRGFRILESLPRRQPDNMVSLIGYNGKPMVYANGTITLAHAAQ 616
             ..|...:|:....::..:..:|:...|| .|.|    :::...|.:..|::::        .:|
 Frog   254 -TVLSVTIPQAFTLVSSPVAYYVKRQFIL-VLKR----SLLKKAGEDFYPVLHS--------MSQ 304

  Fly   617 SGDSEEDGAPLDLIEMDKTLLQKMVLLVLKSI------AVTVKEIRSD------SSDSSIDSTDY 669
            .||        .::|.:.|:|   ||.:|.|:      .|.:::..|.      :|:||.|....
 Frog   305 PGD--------PVLEQEITML---VLALLNSVDQGWLLQVPIRDRISSFGGSYMASESSPDLVVL 358

  Fly   670 DAF-------QDMMLIERSIRDVLS-KLETFIKQTLEF-----------HPECHFSKILIHLFDD 715
            .|.       .::.|:|.::..::: ||::.:.|.|.|           || |.:..:   :|.:
 Frog   359 GAVCLSVLKALEIQLLEVTLSSIIAEKLQSVMDQLLAFLRHHLGWQKPWHP-CEWVSL---VFIE 419

  Fly   716 QDDHLIEAM------------------VCT-----LDVTSGISFRNNAFPELVAMLNPVYTFLEF 757
            |||.::|..                  ||.     :.:..|||.:....|..:        |:..
 Frog   420 QDDDMLEVANILLKMYLRCQNFWSQVPVCVNPGNEMGIWDGISHQFGCDPNCI--------FVLL 476

  Fly   758 LKMTSNSSDLLLDLLVSNETCFLLYLLRLLKYIRMNWTMFVHSCHTFGMGSAMLDEAMGV 817
            |...:..:.:|||.|:|:|||||.|.:|.||.::.:|..|..:|....:.|.....|..|
 Frog   477 LNSVAFDTSVLLDFLISSETCFLEYFVRYLKLLKEDWPRFCLTCTLLELASCRKGSARDV 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
linNP_524815.1 LINES_N 442..801 CDD:291366 89/420 (21%)
LINES_C 814..849 CDD:291367 1/3 (33%)
lins1XP_002939313.3 LINES_N 168..520 CDD:405394 90/425 (21%)
LINES_C 676..707 CDD:405395
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007032
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR16057
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.100

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