DRSC/TRiP Functional Genomics Resources

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Protein Alignment trol and igdcc3

DIOPT Version :10

Sequence 1:NP_001401049.1 Gene:trol / 45320 FlyBaseID:FBgn0284408 Length:4489 Species:Drosophila melanogaster
Sequence 2:XP_003199017.2 Gene:igdcc3 / 555947 ZFINID:ZDB-GENE-080303-24 Length:773 Species:Danio rerio


Alignment Length:670 Identity:157/670 - (23%)
Similarity:245/670 - (36%) Gaps:154/670 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly  2890 ITPEEINGLAGESFQLNCQFTSVASLRYDWSHNGRSLSSSPARNVEIRGNTL-----EVRDASES 2949
            :.|.:|..:..:...|:||...:..:...|..:|..:.......:...|:.|     :::....|
Zfish    33 LEPSDIIAVQQQPLMLHCQVEGIPPISTQWRRSGALVQEDHNYVMFTNGSLLITHFQKIKTDGSS 97

  Fly  2950 DSGVYTCVAYDVRTRRNF---TESARVNIDRREEQPFGNKPIIESLEQNILIIQGEDYSITCEAS 3011
            |.|.|.|:|      :||   ..|.:..:.......|..:|  ||:..::    |......|:..
Zfish    98 DEGDYECIA------QNFFGLVVSRKARVQAATMADFHVQP--ESVRADV----GGVGRFQCQIH 150

  Fly  3012 GSPYPSIKWAKVHDFMPENVH------ISGNVLTIYGARFENRGVYSCVAEND----H--GSDL- 3063
            |.|.|.|.|.:  |..|.:..      :...||.|.|.|.|:.|||.|||.|.    |  |:.| 
Zfish   151 GLPEPVISWER--DGRPVDTSDERFTLLPTGVLQITGVRPEDSGVYCCVAHNSAGVKHSAGAQLT 213

  Fly  3064 ---SSTSIDIEPRERPSVKIVSAPLQTFSVGAPASLYCTVEGIPDPTVEWVRVDGQPLSPRH-KI 3124
               |.:|:..||     :.:|.....|.:|...|.|.|...|.|.|.|.|.|:||:|:.... ::
Zfish   214 VSGSQSSVYKEP-----MILVGPENLTLTVHQTAILECVATGYPRPIVSWSRLDGRPIGVEGIQV 273

  Fly  3125 QSPGYMVIDDIQLEDSGDYECRAKNIVG---EATGVATITVQEPTLVQIIPDNRDLRLTEGDELS 3186
            ...|.::|.|::::.||.|.| |.|..|   ..|....:.||.|  .:.:...:.:....|....
Zfish   274 LGTGNLMISDVRVQHSGVYVC-AANKPGTRVRRTAQGLLVVQAP--AEFVQPPQSIARPVGTTAI 335

  Fly  3187 LTCVGSGVPNPEVEWV-NEMALKRDLY-SPPSNTAILKIYRVTKADAGIYTCHGKNEAGSDEAHV 3249
            .||:..|.|.|::.|: |...|:.|.: ...:|.:.|.||.||:.|..||.|..:|.|||.:|..
Zfish   336 FTCLAQGEPVPQITWLKNGQILEPDGHVKLRNNNSTLTIYGVTQEDEAIYQCIAENSAGSTQASA 400

  Fly  3250 RVEVQERRGDIGGVDDDSDRD-------PINYNPPQQQNPGI------------------HQPGS 3289
            |:.|....| :.|:..|...|       .:.:..|.|....|                  .:..|
Zfish   401 RLTVLWADG-LPGMPTDIQADALSPTSIQVTWKEPTQNTQDIIGYVLHIRKTADPVEMEYQEAVS 464

  Fly  3290 NQLLATDIGDNVTLTCDMF-----------QPLNTRWERVDG-APLPRNAYTIKNRLEIVRVEQQ 3342
            ...|...|||....|...|           :...|..|...| .|.|...:|....|.:::...:
Zfish   465 KMTLQQVIGDLEPSTSYSFYVKAYTSRGASKASETTVESTLGEVPAPPALFTKVINLTVIQATWE 529

  Fly  3343 NLGQYRCNGIGRDGNVKTYFVKELVLMPLPRIRFYPNIPLTVEAGQNLDVHCQVENVRPEDVHWS 3407
                 ....:|:......|:.|    :|:|:.    ..|||.                |.|    
Zfish   530 -----ASTKMGQQEGFNLYYRK----VPVPQF----TGPLTF----------------PRD---- 561

  Fly  3408 TDNNRPLPSSVRIVGSVLRFVSITQ---AAAGEYRCSAFNQYGNRSQIARVAVKKPADFHQVPQS 3469
                            |::: :|||   :...|.:..||||:|..:...|....|.|    |.:|
Zfish   562 ----------------VMQY-NITQLDPSFVYEIKILAFNQHGEGNATLRFVSLKEA----VEKS 605

  Fly  3470 QLQRHREGENIQLQCTVTDQ 3489
            .|       |....|...:|
Zfish   606 VL-------NTPCDCVKDEQ 618

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trolNP_001401049.1 LDLa 447..480 CDD:238060
LDLa 532..564 CDD:238060
LDLa 571..606 CDD:238060
LDLa 616..650 CDD:238060
LDLa 704..739 CDD:238060
LDLa 813..847 CDD:238060
LDLa 852..887 CDD:238060
LDLa 902..936 CDD:238060
LDLa 956..990 CDD:238060
LDLa 997..1030 CDD:238060
LDLa 1033..1067 CDD:238060
LDLa 1072..1105 CDD:238060
LDLa 1133..1165 CDD:238060
LDLa 1182..1215 CDD:238060
LDLa 1221..1251 CDD:238060
LDLa 1252..1286 CDD:238060
LDLa 1292..1326 CDD:238060
Ig 1344..1405 CDD:472250
Ig strand B 1355..1359 CDD:409353
Ig strand C 1369..1372 CDD:409353
Ig strand E 1388..1392 CDD:409353
LDLa 1439..1473 CDD:238060
LDLa 1479..1513 CDD:238060
LDLa 1522..1556 CDD:238060
Ig_Perlecan_like 1574..1649 CDD:143220
Ig strand B 1577..1583 CDD:143220
Ig strand C 1590..1595 CDD:143220
Ig strand E 1613..1617 CDD:143220
Ig strand F 1626..1632 CDD:143220
Ig strand G 1641..1647 CDD:143220
Laminin_B 1748..1878 CDD:459652
EGF_Lam 1935..1989 CDD:238012
Laminin_B 2113..2249 CDD:459652
EGF_Lam <2250..2276 CDD:238012
EGF_Lam 2284..2333 CDD:238012
Laminin_EGF <2369..2399 CDD:395007
Laminin_B 2465..2599 CDD:459652
Ig_3 2688..2756 CDD:464046
Ig_3 2791..2861 CDD:464046
Ig_3 2890..2958 CDD:464046 14/72 (19%)
Ig 2987..3071 CDD:472250 30/99 (30%)
Ig strand B 3004..3008 CDD:409353 0/3 (0%)
Ig strand C 3017..3021 CDD:409353 1/3 (33%)
Ig strand E 3036..3040 CDD:409353 2/3 (67%)
Ig strand F 3050..3055 CDD:409353 3/4 (75%)
Ig strand G 3063..3066 CDD:409353 2/6 (33%)
I-set 3089..3162 CDD:400151 24/76 (32%)
Ig strand B 3094..3098 CDD:409353 2/3 (67%)
Ig strand C 3107..3111 CDD:409353 1/3 (33%)
Ig strand E 3128..3132 CDD:409353 1/3 (33%)
Ig strand F 3142..3147 CDD:409353 2/4 (50%)
Ig strand G 3155..3158 CDD:409353 1/2 (50%)
Ig 3165..3253 CDD:472250 27/89 (30%)
Ig strand B 3185..3189 CDD:409353 0/3 (0%)
Ig strand C 3198..3202 CDD:409353 0/3 (0%)
Ig strand E 3219..3223 CDD:409353 1/3 (33%)
Ig strand F 3233..3238 CDD:409353 3/4 (75%)
Ig strand G 3246..3249 CDD:409353 1/2 (50%)
Ig 3298..3355 CDD:472250 12/68 (18%)
Ig strand B 3301..3305 CDD:409353 0/3 (0%)
Ig strand C 3313..3316 CDD:409353 1/2 (50%)
Ig strand E 3333..3336 CDD:409353 1/2 (50%)
IG_like 3381..3457 CDD:214653 16/78 (21%)
Ig strand B 3390..3394 CDD:409353 0/3 (0%)
Ig strand C 3403..3407 CDD:409353 1/3 (33%)
Ig strand F 3437..3442 CDD:409353 1/4 (25%)
IG_like 3475..>3536 CDD:214653 3/15 (20%)
Ig strand B 3480..3484 CDD:409353 0/3 (0%)
Ig strand C 3491..3503 CDD:409353
Ig strand E 3519..3523 CDD:409353
Ig 3613..3675 CDD:472250
Ig strand B 3625..3629 CDD:409353
Ig strand C 3637..3642 CDD:409353
Ig strand E 3658..3662 CDD:409353
IG_like 3706..3772 CDD:214653
Ig strand B 3714..3718 CDD:409353
Ig strand C 3727..3731 CDD:409353
Ig strand E 3746..3750 CDD:409353
Ig strand F 3760..3765 CDD:409353
Ig strand G 3774..3777 CDD:409353
LamG 3794..3939 CDD:238058
EGF 3962..3994 CDD:394967
LamG 4042..4195 CDD:238058
EGF_CA 4254..4286 CDD:238011
LamG 4295..4448 CDD:238058
igdcc3XP_003199017.2 IgI_1_Neogenin_like 28..122 CDD:409387 18/94 (19%)
Ig strand A 28..31 CDD:409387
Ig strand A' 34..40 CDD:409387 2/5 (40%)
Ig strand B 44..54 CDD:409387 3/9 (33%)
Ig strand C 58..64 CDD:409387 1/5 (20%)
Ig strand C' 66..69 CDD:409387 1/2 (50%)
Ig strand D 74..79 CDD:409387 0/4 (0%)
Ig strand E 81..87 CDD:409387 2/5 (40%)
Ig strand F 100..107 CDD:409387 4/12 (33%)
Ig strand G 111..122 CDD:409387 1/10 (10%)
Ig 130..214 CDD:472250 28/91 (31%)
Ig strand B 143..147 CDD:409389 0/3 (0%)
Ig strand C 156..160 CDD:409389 1/3 (33%)
Ig strand E 179..183 CDD:409389 2/3 (67%)
Ig strand F 193..198 CDD:409389 3/4 (75%)
Ig strand G 207..210 CDD:409389 0/2 (0%)
Ig_3 225..297 CDD:464046 24/77 (31%)
I-set 318..404 CDD:400151 26/85 (31%)
Ig strand B 334..338 CDD:409390 0/3 (0%)
Ig strand C 347..351 CDD:409390 0/3 (0%)
Ig strand E 369..374 CDD:409390 1/4 (25%)
Ig strand F 384..389 CDD:409390 3/4 (75%)
Ig strand G 397..400 CDD:409390 1/2 (50%)
FN3 411..504 CDD:238020 15/92 (16%)
fn3 509..589 CDD:394996 24/129 (19%)
Blue background indicates that the domain is not in the aligned region.

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