DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trol and Sspo

DIOPT Version :9

Sequence 1:NP_001027038.3 Gene:trol / 45320 FlyBaseID:FBgn0284408 Length:4479 Species:Drosophila melanogaster
Sequence 2:NP_001007017.1 Gene:Sspo / 474348 RGDID:1549716 Length:5141 Species:Rattus norvegicus


Alignment Length:4176 Identity:815/4176 - (19%)
Similarity:1161/4176 - (27%) Gaps:1698/4176 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   501 EPEAE------------PEPEPEPEPESEPEQEPEPQVPEANECQANEFRCNNGDCIDARKRCNN 553
            ||.||            |||...|.|                 |..|..|.|     .||..|..
  Rat  1170 EPTAELTAHSWRLNPLCPEPGDLPHP-----------------CSVNAHRVN-----WARAHCEV 1212

  Fly   554 V-----SDCSEGEDENEECPAACSGMEYQCRDGTRCISVSQQCDGHSDCSDGDDEEHCDGSGYDS 613
            :     :.|      :.|.|.    .:|.    ..|:..:..||...||     |..|......:
  Rat  1213 ILQPIFAPC------HTEVPP----QQYY----EWCVYDACGCDTGGDC-----ECLCSAIATYA 1258

  Fly   614 EECRFDEFHC--GTGECIPMRQVCDNIYD---------CNDYSDE-------VNCVEGEEEDRVG 660
            :||.....|.  .:.|..|::.....:|:         |:|:..|       :.||||     ..
  Rat  1259 DECARHRHHVRWRSQELCPLQCEGGQVYEPCGSTCPPTCHDHHPELRWHCQAITCVEG-----CF 1318

  Fly   661 IPIGHQPWRPASKHDDWLHEMD--TSEYQ--VYQPSNVYEK-------ANSQ---NP-------- 703
            .|.|      ...|.....|:.  ..|:|  .:.|..|.:|       ..||   ||        
  Rat  1319 CPEG------TLLHGGTCVELTDCPCEWQGSFFPPGAVLQKDCGNCTCQESQWHCNPSGAPCEEM 1377

  Fly   704 ---CASNQFRCTTSNVCIPLHLRCDGFYHCNDMSDEKSCEQYQRHTTTRRPLTLATPTSRITTQG 765
               ||..:..|..|..|:||...||....|.|.|||:.|:                         
  Rat  1378 EPGCAEGEALCRESGHCVPLEWLCDNQDDCGDGSDEEGCD------------------------- 1417

  Fly   766 PGLLERRNTTTATEASRWPWATKTTTIATTTSNPITTVGVANSPPQTCLENIEFACHNRDCISIE 830
                                               |:|         |.|. :.:|.:..|:.:.
  Rat  1418 -----------------------------------TSV---------CGEG-QMSCQSGRCLPLS 1437

  Fly   831 SVCDGIPDCGRNEDEDDALC-----KCSGDKYKCQRGGGCIPKSQVCDGKPQCHDRSDESACHLH 890
            .:|||..|||...||...||     .|:        .|.|:|.:.:|||.|.|.|.:||.:|   
  Rat  1438 LICDGQDDCGDGTDEQGCLCPQGFLACA--------DGRCLPPALLCDGHPDCLDAADEESC--- 1491

  Fly   891 GRLNKTRLG-VKCLESQYQCGDGSCISGYKRCNGIHDCADASDE--YNC-----------IYDYE 941
                   || |.|...:..|.||.||...:.|:|:.||.|.:||  .:|           |....
  Rat  1492 -------LGWVSCTSGEVSCVDGPCIRTIQLCDGVWDCPDGADEGPVHCSSPSLPTPPAGIGQNP 1549

  Fly   942 DTY--DTDP----NNNPLNECDILEFECDYSQCLPLEKKCDGYADCEDMSDELECQSYTDHCLES 1000
            .|.  ||.|    :.:|.:.|.:.||:|:..:|.|...:||...||.|.||||:|..   .|...
  Rat  1550 STSSPDTSPSPVGSASPASPCSLSEFQCNSGECTPRGWRCDREEDCTDGSDELDCGG---PCKLY 1611

  Fly  1001 EFEC--DSYCLPRDQLCNGIPNCQDGSDERNCTFCREDAYLCNTGECVADNQRCNGIADCADGSD 1063
            :..|  ..:||...|||:|:..|.||||        ||..:|.........   ||.|       
  Rat  1612 QMPCAHGPHCLSPGQLCDGVAQCPDGSD--------EDPDVCEERSASGGP---NGTA------- 1658

  Fly  1064 ERHCARIYCPPNKLACNGTCVSRRIKCDGIRDC------LDGYDEMYCPETNNHYPTQNVNVIRP 1122
             ..|....||      ||||:...:.|||..||      ....||..|....:..|.:       
  Rat  1659 -VPCPEFSCP------NGTCIDFLLVCDGSPDCELADETEPSLDEQGCGTWGSWGPWE------- 1709

  Fly  1123 KLGPNPIPKSCRPHEWQCANLECIDSSLQCNEIKDCS----------------DGSDEELSV--- 1168
                 |..::|.| ..|..|..|..|||  :.:::|.                ||.....|:   
  Rat  1710 -----PCSQTCGP-GIQSRNRNCSISSL--HVLQNCPGLQHQSQSCFTEACPVDGEWSSWSLWSP 1766

  Fly  1169 ----CFGTAT--TRLKP-----SDC-------------SPEQFYC-DESCYNRSVRCNGH----- 1203
                |.||.|  .:.:|     .||             ||    | .|.|.|  |.|.|.     
  Rat  1767 CSEPCGGTMTRHRQCRPPQNGGQDCALLPGSTHSTHQTSP----CPQEGCLN--VTCFGELVFRP 1825

  Fly  1204 -----VDCSDGSDEVGCS--LPC--PQHQCPSGRCYTESERCDRHRH------------------ 1241
                 :.|.|.|.|..||  .||  |...||.|:......||.|.|.                  
  Rat  1826 CAPCPLTCDDISGEAVCSPDRPCSSPGCWCPEGKVLGTEGRCVRPRQCPCLVDGIRYWPGQRIKM 1890

  Fly  1242 ------CEDG--------------------SDEANC---CYAN----QFRCNNGDCVSG------ 1267
                  |:||                    |..|.|   |.:.    .||..|...:||      
  Rat  1891 DCQLCFCQDGQPHRCRPNPECAVDCGWSSWSPWAECLGPCSSQSLQWSFRSPNNPRLSGHGRQCR 1955

  Fly  1268 ----------SAPCNGYSE--CSDHSDELNCGG---TQECLPNQF-RCNS----GQCVSSSVRCN 1312
                      :.||.|..:  .:.|..|...||   ..|||.... ||:.    |.|..|.|...
  Rat  1956 GIHRKARRCQTEPCEGCEQWGLTYHVGERWRGGPCTVCECLHRSITRCSPYCPIGSCPQSWVLVE 2020

  Fly  1313 GRTD--CQDSSDEQNCAADSNDR------------RPNQ------------------------LN 1339
            |..:  |       :||....::            .|:.                        ..
  Rat  2021 GMGESCC-------HCALPGKNQTMIPVTTPAPVPTPSPQIGASLVTYVLPPMSDACYSPLGLAG 2078

  Fly  1340 LKTYPDSQIIKES-REVIFRCRDEGPARAKVKWSRPGGRPL--------PPGFT----DRNG--- 1388
            |.|:..||.::.| |.........||...:..::....:||        |...|    .|.|   
  Rat  2079 LPTWAPSQPLEHSTRAAPVEAPTAGPGPREDAYAEWHTQPLYLQLDLLWPRNLTGIMVQRAGSSA 2143

  Fly  1389 --------------------------RLEIPNIRVEDAGTYVCEAVGYASYIPGQQVTV-----N 1422
                                      .|..|....|.:...|.|...:...:..:.:.|     :
  Rat  2144 AYISNLSLQFSSDGLQWHSVLNSLSSTLPPPKPSPESSNHMVPEVWTFDQMVQARYIRVWPHGSH 2208

  Fly  1423 LNVERYNDV-------GSRP----ESACTEYQATCMNGECIDKSSICDGNPDCSDASDEQSC--- 1473
            |......|:       |.:|    ...|...:..|.||:|..|...|||..||.|.|||:.|   
  Rat  2209 LRDNNQQDIFLWVELLGCKPVPPLAPLCPGTRHRCANGDCALKGGPCDGAVDCEDGSDEEGCGPL 2273

  Fly  1474 ------------------------------------------------SLG-------------- 1476
                                                            |.|              
  Rat  2274 RASTASRVHSTARTPALSPTQPGKFPFHPREGLADMEHQQPKQESPMPSAGVSPSASEGLLPVSG 2338

  Fly  1477 ---------------------------------------------------LKCQPNQFMCSNSK 1490
                                                               ::|.|.|..|....
  Rat  2339 QSMQTLTTTSTFPPGLKSLHPGMAAVTVHSPHSVMPGTPVGQSVSPRPFPLMRCGPGQVPCDVLG 2403

  Fly  1491 CVDRTWRCDGENDCGDNSDETSC-DPEP-------------SGAPCRYNEFQCRSGHCIPKSFQC 1541
            ||::...|||..||.|.|||..| .|||             |.|.|..::..|.||.|:|...:|
  Rat  2404 CVEQEQLCDGREDCLDGSDEQHCASPEPFTVPTTALPGLPASRALCSPSQLSCGSGECLPLEHRC 2468

  Fly  1542 DNVPDCTDGTDEVGC----MAPLP--------------------IRPPPQSVSLLEYEVLELTCV 1582
            |...:|.||:||..|    :||..                    :|||....|.|..::....|.
  Rat  2469 DLQVNCQDGSDEDDCVDCVLAPWSGWSDCSRSCGLGLIFQHRELLRPPLPGGSCLLDQLRSQPCF 2533

  Fly  1583 ATGTPTPTIVWRLNWGHVPDKCESKSYGGTGTLR---CPDMRPQDSGA---------YSCEIINT 1635
            ....|... .| ..||  |.:..|.|.||....|   |.|..|::.||         ..|.:...
  Rat  2534 VQACPVAG-AW-AKWG--PWEPCSVSCGGGHQSRQRSCVDPPPKNGGAPCPGPSHEKVLCNLQLC 2594

  Fly  1636 RGTHFVNPDTIVTVRPVRTDVCEAGFF-----NMLARKAE-----ECVQ-CFCFGVAKACDSANL 1689
            .|.....|..:    .|..::|:.|..     :.|..:|.     .||: |.|        ...|
  Rat  2595 PGDTDCEPGRV----HVNAELCQKGLLPPCPPSCLDPEANRSCSGHCVEGCRC--------PPGL 2647

  Fly  1690 FTYAIH-------PPILSHRVVSVELSPLRQ-----------IVINEAAPGQDL--------LTL 1728
            |....|       |.::..:::...|:.|..           ::...||..|..        ...
  Rat  2648 FLQDSHCLPLSECPCLVGQKLMQPGLAFLLDNCSQCICESGILLCKPAACSQSCGWSAWSPWTAC 2712

  Fly  1729 LH----GVQFRATNVHFSGRETPYLALPADYMGNQLKSYGGNLRYEVNYRGSGRPVNG------- 1782
            .|    ||:.|     |.....|    ||.:.|:..:  |.....:..|...|..:.|       
  Rat  2713 DHSCGSGVRAR-----FRSPTNP----PAAFGGSPCE--GDRQELQACYTDCGTDIPGWTPWTSW 2766

  Fly  1783 ----PDVIITGNRFTLTYRVRTQPGQNNRVSI------PFVPGGWQKPDGRKASREE-IMMILAN 1836
                ...::.|.          .||:..|..:      .|.||        :|::|| ....|..
  Rat  2767 SSCSQSCLVPGG----------DPGRRQRSRLCPSSRDTFCPG--------EATQEEPCSPSLCP 2813

  Fly  1837 VDNILIRLGYLDSTAREVDLINIALDSAGTADKG--------LGSASLVEKC-------QCPPGY 1886
            |.:   ..|...|.:......|..:.:.|.:..|        ||..:....|       |||...
  Rat  2814 VPS---AWGLWASWSACSASCNGGIQTRGRSCSGSAPGNPVCLGPHTQTRDCNVHPCTAQCPGNM 2875

  Fly  1887 VGDSCESCASG--------YVRQPGGPWLGHCVPFIPDSCPSGTYGDPRRGVPCKECPCPLTGSN 1943
            |..|.|.|...        ..:.||....|.|.|..  |||.|.:......:|..:|||.|.| .
  Rat  2876 VFRSAEKCLEEGGPCPQLCLAQDPGVECTGSCAPGC--SCPPGLFLHNASCLPRSQCPCQLHG-Q 2937

  Fly  1944 NFASGCQQSPDGDVVCRCNEGYTGRRCEQCAAGYQGNPLAAGGICRRIPDTSCNVD-------GT 2001
            .:|.|.....|.: .|.|:.|......|:|......:|......|.:    ||||.       ||
  Rat  2938 LYAPGAVARLDCN-NCTCSSGEMVCTSERCPVACGWSPWTPWSPCSQ----SCNVGIRRRFRAGT 2997

  Fly  2002 YSVHSNGTCQCKDSVIGEQCDTCKSKSFHLNSFTYTGCIECFCSGVGLDCDSSTW---------- 2056
            ....:.|..:|:...:..:..|.:.                 |.|.|  ...|:|          
  Rat  2998 APPAAFGGAECRGPNLDAEFCTLRP-----------------CQGPG--AAWSSWTPCSVPCGGG 3043

  Fly  2057 YRDQVTSTFGRSRVDHGFVLVTNYMQPTPDTVP---------VSMAAEPNALSFIGSADQSGNTL 2112
            ||::...:...|.|:..    |..:||....||         :..|..|.:.:.:.:..::..|.
  Rat  3044 YRNRTQGSGRHSPVEFS----TCSLQPCAGPVPGVCPKDQQWLDCAQGPASCAHLSTPREANQTC 3104

  Fly  2113 Y---WSLPAAFLGNKL--------SSYGGKLTYTLSYSP-----LP-------NGIMSRNSA--- 2151
            :   :.|....|.|.:        .::.|:|     :||     ||       :|:::..|:   
  Rat  3105 HPGCYCLSGMLLLNNVCVPAQDCPCAHRGRL-----HSPGSAVILPCENCSCVSGLITNCSSWPC 3164

  Fly  2152 -----------PDVVIKSGEDLRLIHYRKSQVVPSVANTYSVEIKESAWQRGDEVVANREHVLMA 2205
                       |..|..:.......|.|:..|.||....:|:::.                    
  Rat  3165 EEGQPAWSSWTPWSVCSASCSPARRHRRRFCVRPSTTAPFSLDLP-------------------- 3209

  Fly  2206 LSDITAIYIKATYTTSTKEASLRQVTLDVATPTNLGTPRAVEVEQCRCPEGYLGLSCEQCAPGYA 2270
                         ||             ||.||.|......|.|.|..|      .|.|......
  Rat  3210 -------------TT-------------VAAPTMLCPGPEAEEEPCLLP------GCNQAGVWGP 3242

  Fly  2271 RDPEGGIYLGLCRPCECNGHSKYCNSDTGDCEECSDNTEGPSCERCAAGYVGDATRGTIYDCQPD 2335
            ..|    :.|..|.|.....|:....|....:...|..|||.    |.|....|....:.:|...
  Rat  3243 WSP----WSGCSRSCGGGLRSRTRACDKPPPQGLGDFCEGPQ----AQGEACQAQPCPVANCSTI 3299

  Fly  2336 EG--YPIPSPPAPG--NQTLECTAYCQIEGIYDCRGNECLCKRNVIGDQCDQC-----------R 2385
            ||  |....||.|.  :..:.|..:|| .|.| |...:.|.....|..|...|           .
  Rat  3300 EGAEYSPCGPPCPRSCDDLVHCMWHCQ-PGCY-CPPGKVLSADGAICVQPHHCSCLDLLTGKRHH 3362

  Fly  2386 PGTYGLSAQNQDGCKECYC------------------------SGLASQCRSAALYRQ---LIPV 2423
            ||:   .....|||..|.|                        :..:..||.....|.   :.|.
  Rat  3363 PGS---QLMRPDGCNHCTCMEGRLNCTDLPCQVSGDWCPWSEWTACSQPCRGQTRTRSRACVCPA 3424

  Fly  2424 DFILNAPLITDESGAVQDTENLIPDISRNMYTYTHTSYLP--KYWSLRGS------VLGNQLFSY 2480
            .....|| ..:|:|..        .:...|....:.:..|  ..||..||      .||.   ||
  Rat  3425 PQHGGAP-CPEEAGET--------GVQHQMEACPNPTACPVDGAWSPWGSWSPCDACLGQ---SY 3477

  Fly  2481 GGRLSYSLIVESYGNYERGHDIVLIGNGLKLIWSRPDGNENQEEYNVRLHEDEQWTRQDRESARP 2545
            ..|:.      |:.....|....|.|:                          |.:|..|.|:.|
  Rat  3478 RSRMC------SHPPPSDGGTPCLGGH--------------------------QQSRPCRNSSTP 3510

  Fly  2546 AS----RSDFMTVLSDLQHILIRATPRVPTQSTSIGNVILESAVTTRTPGATHASDIELCQCPSG 2606
            .:    ..|.:.......|         ..|..|:|        :|..||::...  ..|.||.|
  Rat  3511 CTDCGGGQDLLPCGQPCPH---------SCQDLSLG--------STCQPGSSGCQ--SGCGCPPG 3556

  Fly  2607 YVGTS--CESCAPLHY----------RDASGSCSLCPCDVSNTESCDLVSGGYVECRCKARWKGD 2659
            .:...  |...|..|.          .:.|.|.........:.|..::|:|....|.|.|...  
  Rat  3557 QLSQDGLCVFPADCHCHFQPKAMGIPENQSRSVGSALSSWESLEPGEVVTGPCDNCTCVAGVL-- 3619

  Fly  2660 RCREIDTNDPTDIGTEDPVLTQIIVSIQKP-EITIVPVGGSMTL--------SCSGRMRWSNSPV 2715
            :|.|:    |:..|..       |.|...| |...||.||...|        .|.|..:.|.:..
  Rat  3620 QCHEV----PSCPGPG-------IWSSWGPWEKCSVPCGGGEQLRSRQCARPPCPGLAQQSRTCH 3673

  Fly  2716 IVNWYKENSRLPENVEVQGGNLYLYDLQVSDSGVYICQAVNNETASVFKD--------------- 2765
            |        .:........|.|| .:.|.|:...:.|..|..:.|...:.               
  Rat  3674 I--------HVCRETGCPAGRLY-RECQPSEGCPFSCAHVTGQVACFSESCEEGCHCPEGTFQHH 3729

  Fly  2766 -----------TVSI-----------------------TITKKDQLSPAEIV-----NLPSHVTF 2791
                       |||:                       .:...|:|.|.:::     |.      
  Rat  3730 SACVQECPCVLTVSLLQELGVASTALRSYPVLLGDEGQPLGPGDELDPGQMLQTVCGNC------ 3788

  Fly  2792 EEYVNNEIIC------EVLGNPAPRVTWARVDGHADAQSTRTYDNRLIFDSPRKSDEGRYRCQAE 2850
             ..|:.::.|      .|.|...|...|:..........|||...:.:.  |..:..| ..|:. 
  Rat  3789 -SCVHGKLSCSMEECSRVRGYFGPWGMWSLCSHSCGGLGTRTRTRQCVL--PTLAPAG-LSCRG- 3848

  Fly  2851 NDQNRDEKYVIVYVQSNPPQPPPQQDRLYI-----------TPEEINGLA--------------- 2889
                                  |.||..|.           |.|.:.|||               
  Rat  3849 ----------------------PLQDLEYCFSPECPGTAGSTVEPVTGLAGGWGPWSPWSPCSHS 3891

  Fly  2890 ----------------------GESFQ----------------------LNCQFTSVA------- 2903
                                  |:|.|                      .||.:||.|       
  Rat  3892 CTDLTHPAWRSRTRLCLANCTVGDSSQERPCNLPSCTTLPLCPGPGCGSENCFWTSWAPWEPCSR 3956

  Fly  2904 ------------------------------------SLRY-----DWSH------------NGRS 2915
                                                :||.     .|||            .|||
  Rat  3957 SCGVGQQRRLRAYHPPGPGGHWCPDILTAYQERRFCNLRACPVPGGWSHWSPWSWCDRSCGGGRS 4021

  Fly  2916 L-----SSSPARN--VEIRGNTLEVRDAS----ESD--SGV----------YTCVAYDVRTRRNF 2957
            |     ||.|.:|  ....|....||..:    |.|  :|:          |:|  .|::.....
  Rat  4022 LRSRSCSSPPPKNGGASCVGERHHVRSCNPMPCEKDCPAGMEMVSCANRCPYSC--SDLQEAVMC 4084

  Fly  2958 TESARVNIDRREEQPFGNKPIIESLEQN----------ILIIQGEDYS----------------- 2995
            .|.....:..|..:.|        |||:          ....||..::                 
  Rat  4085 QEDQACQLGCRCSEGF--------LEQDGGCVPVGHCECTDAQGRSWAPGSQHQDACNNCSCQAG 4141

  Fly  2996 -ITCEASGSPYPSIKWAKVHDFMPENVHISGNVLTIYGARFENRGVYSCVAENDHGSDLSSTS-- 3057
             ::|.|...|.|:              |.:.:..:.:.|     ..:||..........||||  
  Rat  4142 QLSCTAQPCPPPA--------------HCAWSHWSAWSA-----CSHSCGPHGQQSRFRSSTSGS 4187

  Fly  3058 --IDIEPRERPSVKIVSAPLQTFSV--------------GAPASLYCTVEG---------IPDPT 3097
              ::.:..:..|......|.....:              |......||.||         :|...
  Rat  4188 WALECQKEQSQSQPCPEDPCPPLCLHEAHLHVLGDNWLHGECQQCSCTPEGVICKDTDCAVPGGW 4252

  Fly  3098 VEW---------------VRVDGQPLS-PRH---KIQSPGYMVIDDIQLEDSGDYEC-------- 3135
            ..|               ||.....:| |:|   ..|.|      |.|.:..|...|        
  Rat  4253 TLWSSWSYCSVSCGGGSQVRTRSCMVSAPQHGSPSCQGP------DTQTQHCGQQLCLQLLEICS 4311

  Fly  3136 -----RAKNIVGEATGVATITVQEPTLVQIIPDNRDLRLTEGD-ELSLTCVG----SGVPNP--- 3187
                 ......|  ||:|:.:...|.|           ||:.| |.:.|..|    :..|.|   
  Rat  4312 WGPWGPCSRSCG--TGLASRSGSCPCL-----------LTKEDSECNDTFSGLDTQACYPGPCQE 4363

  Fly  3188 EVEWVNEMALKRDLYSPPSNTAIL--KIYRVTKADAGIYTCHGKNEAGSDEAHVRVEVQERRGDI 3250
            :..|.:..:..|      .:..||  :.||        :......:||.......::...|...|
  Rat  4364 DCMWSDWSSWTR------CSCKILVQQRYR--------HQVPAPGQAGEGTLCTGLDGHFRPCAI 4414

  Fly  3251 GGVDDDSDRDPINYN----------------------PPQQQNPGIHQPGSNQLLATDIGDNVTL 3293
            |...:||...|..:.                      ||.|  ||.:.|..  ||..|.|..:..
  Rat  4415 GNCSEDSCLPPFEFQSCGSPCAGLCATHLSHQLCQDLPPCQ--PGCYCPMG--LLEQDGGCILPE 4475

  Fly  3294 TCDMFQPLNTRWE--RVDGAPLPRNAYTIKNRLEIVRVE---QQNLGQYRCNGIGRDGNVKTYFV 3353
            .|:.:   :|..|  ||..||        .:||::...|   |.  |:.:|:..|.:|       
  Rat  4476 QCNCW---HTSGEGARVTLAP--------GHRLQLGCKECVCQS--GELQCSSQGCEG------- 4520

  Fly  3354 KELVLMPLPR-IRFYPNIPLTVEAGQNLDVHCQVENVRPEDVHWSTDNNRPLPSSVRIVGSVLRF 3417
                |:||.. ..:.|..|...::....|....:|      |||      ||.:||.::.|    
  Rat  4521 ----LLPLTGWSEWSPCGPCLPQSALAPDSRTALE------VHW------PLNTSVTLLAS---- 4565

  Fly  3418 VSITQAAAGEYRCSAFNQYGNR----SQIARVAVKKPADFHQVPQSQLQRHREGENIQLQCTVTD 3478
                            .||.:|    .:..|.....|| ...||.|| ||......   .|..|.
  Rat  4566 ----------------EQYRHRLCLDPETGRPWAGDPA-LCTVPLSQ-QRLCSDPG---ACHDTC 4609

  Fly  3479 QYG---------VRAQDNVEFNWFRDDRRPLPNN--------ARTDSQILVLTNLRPEDAGRYIC 3526
            |:|         |......:..|    |....|:        |:|:|                 |
  Rat  4610 QWGPWGPWSPCQVPCSGGFKLRW----REASDNSVGECRGPWAQTES-----------------C 4653

  Fly  3527 NS--------------YDVDRGQQLPEVSIDL----QVLRAPQYPYNRFKGGVSLKDTPCMVLYI 3573
            |.              :.:|...|.|....||    |.|:.|..|..|...|..::|..|:.:..
  Rat  4654 NMGSCPGESCETRDTVFTLDCANQCPRSCADLWEGVQCLQGPCSPGCRCPPGQLVQDGHCVPISS 4718

  Fly  3574 CAAATPPPNSPIYLPP 3589
            |....|..|:...|.|
  Rat  4719 CRCGLPSANASWELAP 4734

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trolNP_001027038.3 LDLa 447..480 CDD:238060
LDLa 532..564 CDD:238060 8/36 (22%)
LDLa 571..606 CDD:238060 7/34 (21%)
LDLa 616..650 CDD:238060 8/51 (16%)
LDLa 704..739 CDD:238060 14/34 (41%)
LDLa 813..847 CDD:238060 12/33 (36%)
LDLa 852..887 CDD:238060 12/34 (35%)
LDLa 902..936 CDD:238060 13/35 (37%)
LDLa 956..990 CDD:238060 15/33 (45%)
LDLa 997..1030 CDD:238060 13/34 (38%)
LDLa 1033..1067 CDD:238060 6/33 (18%)
LDLa 1072..1105 CDD:238060 13/38 (34%)
LDLa 1133..1165 CDD:238060 11/47 (23%)
LDLa 1182..1215 CDD:238060 14/56 (25%)
LDLa 1221..1251 CDD:238060 12/73 (16%)
LDLa 1252..1286 CDD:238060 11/55 (20%)
LDLa 1292..1326 CDD:238060 10/40 (25%)
IG 1344..1421 CDD:214652 17/118 (14%)
Ig 1344..1405 CDD:299845 15/102 (15%)
LDLa 1439..1473 CDD:238060 15/33 (45%)
LDLa 1479..1513 CDD:238060 15/33 (45%)
LDLa 1522..1556 CDD:238060 13/33 (39%)
IG_like 1566..1649 CDD:214653 21/94 (22%)
Ig_Perlecan_D2_like 1574..1649 CDD:143220 19/86 (22%)
Laminin_B 1748..1864 CDD:278481 22/133 (17%)
EGF_Lam 1935..1989 CDD:238012 14/53 (26%)
Laminin_B 2113..2238 CDD:278481 23/161 (14%)
EGF_Lam <2250..2276 CDD:238012 5/25 (20%)
EGF_Lam 2284..2333 CDD:238012 10/48 (21%)
Laminin_EGF <2369..2399 CDD:278482 7/40 (18%)
Laminin_B 2465..2587 CDD:278481 23/131 (18%)
I-set 2686..2772 CDD:254352 22/143 (15%)
Ig_2 2689..2771 CDD:290606 22/139 (16%)
Ig 2779..2865 CDD:299845 14/96 (15%)
IG_like 2798..2864 CDD:214653 11/71 (15%)
Ig 2882..2965 CDD:299845 35/224 (16%)
IG_like 2882..2950 CDD:214653 33/209 (16%)
Ig 2977..3061 CDD:299845 17/115 (15%)
IG_like 2984..3058 CDD:214653 15/105 (14%)
IG_like 3074..3152 CDD:214653 23/132 (17%)
Ig 3086..3153 CDD:299845 21/107 (20%)
I-set 3155..3243 CDD:254352 18/97 (19%)
IGc2 3171..3233 CDD:197706 12/71 (17%)
IG 3371..3447 CDD:214652 15/79 (19%)
IGc2 3377..3437 CDD:197706 11/59 (19%)
Ig 3456..3534 CDD:299845 20/108 (19%)
IG 3465..>3526 CDD:214652 11/77 (14%)
Ig 3603..3665 CDD:299845
IG 3610..3683 CDD:214652
IG 3696..3762 CDD:214652
Ig 3704..3771 CDD:299845
LamG 3784..3929 CDD:238058
EGF 3952..3984 CDD:278437
LamG 4032..4185 CDD:238058
Laminin_G_2 4315..4444 CDD:280389
SspoNP_001007017.1 VWD 192..341 CDD:214566
C8 393..468 CDD:285899
TIL 472..527 CDD:280072
VWD 556..716 CDD:214566
C8 769..826 CDD:285899
TIL 830..883 CDD:280072
VWD 1019..1168 CDD:278521
C8 1206..1276 CDD:285899 18/88 (20%)
TIL 1280..1336 CDD:280072 12/66 (18%)
LDLa 1381..1416 CDD:238060 14/34 (41%)
LDLa 1421..1455 CDD:238060 12/34 (35%)
LDLa 1457..1491 CDD:238060 13/41 (32%)
LDLa 1497..1528 CDD:197566 11/30 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1533..1567 6/33 (18%)
Ldl_recept_a 1568..1604 CDD:278486 15/35 (43%)
TSP1 1702..1753 CDD:214559 11/65 (17%)
TSP1 1758..1812 CDD:214559 12/57 (21%)
TIL 1822..1873 CDD:280072 16/50 (32%)
TSP1 1917..1970 CDD:214559 10/52 (19%)
FA58C 2070..2226 CDD:214572 22/155 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2087..2109 4/21 (19%)
FA58C <2111..2225 CDD:238014 14/113 (12%)
LDLa 2236..2270 CDD:238060 15/33 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2262..2335 7/72 (10%)
LDLa 2392..2426 CDD:238060 15/33 (45%)
LDLa 2449..2483 CDD:238060 13/33 (39%)
TSP1 2490..2538 CDD:214559 7/47 (15%)
TSP1 2543..2595 CDD:214559 15/54 (28%)
TIL 2618..2660 CDD:280072 9/49 (18%)
TSP1 2703..2752 CDD:214559 11/59 (19%)
TSP1 2760..2813 CDD:214559 11/70 (16%)
TSP_1 2819..2867 CDD:278517 8/47 (17%)
TIL 2871..2930 CDD:280072 16/60 (27%)
VWC_out 2932..2979 CDD:214565 12/48 (25%)
TSP1 2972..3023 CDD:214559 11/71 (15%)
TIL 3075..3127 CDD:280072 6/51 (12%)
TSP1 3240..3292 CDD:214559 13/59 (22%)
TIL 3300..3350 CDD:280072 15/51 (29%)
TSP1 3396..3439 CDD:214559 8/43 (19%)
TSP1 3460..3504 CDD:214559 15/78 (19%)
TIL 3514..3570 CDD:280072 14/74 (19%)
TSP1 3633..3677 CDD:214559 12/51 (24%)
TSP1 3810..3862 CDD:214559 12/77 (16%)
TSP1 3879..3927 CDD:214559 3/47 (6%)
TSP1 3945..3998 CDD:214559 5/52 (10%)
TSP1 4003..4055 CDD:214559 14/51 (27%)
TIL 4058..4113 CDD:280072 10/64 (16%)
TSP1 4158..4208 CDD:214559 9/54 (17%)
TSP1 4252..4303 CDD:214559 11/56 (20%)
TSP1 4367..4418 CDD:214559 11/64 (17%)
TIL 4422..4477 CDD:280072 11/58 (19%)
TSP1 4611..4659 CDD:214559 10/68 (15%)
TIL 4673..4719 CDD:280072 13/45 (29%)
TSP1 4763..4812 CDD:214559
TIL 4814..4868 CDD:280072
TIL 4920..4978 CDD:280072
VWC 4980..5035 CDD:302663
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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