DRSC/TRiP Functional Genomics Resources

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Protein Alignment trol and cadm2

DIOPT Version :10

Sequence 1:NP_001401049.1 Gene:trol / 45320 FlyBaseID:FBgn0284408 Length:4489 Species:Drosophila melanogaster
Sequence 2:XP_031751706.1 Gene:cadm2 / 448238 XenbaseID:XB-GENE-998536 Length:441 Species:Xenopus tropicalis


Alignment Length:348 Identity:83/348 - (23%)
Similarity:138/348 - (39%) Gaps:75/348 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly  2871 IVYVQSNPPQPPPQQDRLYITPEEINGLAGESFQLNCQFTSVASLRYDWSHNGRSLSSSPARNV- 2934
            ::...::|....|.|.:..:| :.:..:.|.:..|.|        |.|.:.|.....|:||:.. 
 Frog    17 VIVQAASPRNKKPSQGQFPVT-QNVTVVEGGTINLTC--------RVDQNDNTSLQWSNPAQQTL 72

  Fly  2935 ------EIRGNTLE------------VRDASESDSGVYTCVAYDVRTRRNFTESARVNIDRREEQ 2981
                  .:|.|.:|            :.|.|.||.|.|||..:.:..:   |..|.:.:....|.
 Frog    73 YFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPVK---TSKAYLMVLGVPEN 134

  Fly  2982 PF---GNKPIIESLEQNILIIQGEDYSITCEASGS-PYPSIKWAKVHDFMPENVHI-----SGNV 3037
            |.   ...|::|          |:...:||::||| |...|:|.|....:.:...|     :|..
 Frog   135 PHISGFTSPVME----------GDTIQLTCKSSGSKPAADIRWFKNDQEITDVQKIQQQDSNGKT 189

  Fly  3038 LTI------YGARFENRGVYSCVAENDHGSDLSSTSID---IEPRERPSVKIV-SAPLQTFSVGA 3092
            .|:      .|.|.::..|..|  ..||.|..|:..|.   :|....|:|:|: |.||.  ..|.
 Frog   190 FTVTSSLVFQGDRKDDGAVIRC--RVDHESLTSTPQIAKQVLEIHYTPTVRILPSTPLP--QEGQ 250

  Fly  3093 PASLYCTVEG--IPDPTVEWVRVDGQPLSPRHKIQSPGYMVIDDIQLEDSGDYECRAKNIVGEAT 3155
            |..|.|..:|  :|:| |.|.:..|:...|.....:...:.|..:...|:|.|.|.|.|.:|:::
 Frog   251 PLILICESKGKPLPEP-VLWTKDGGELPDPERMTVNGRELTISFLNKTDNGTYRCEATNSIGQSS 314

  Fly  3156 GVATITVQE------PTLVQIIP 3172
            ....:.:.:      ||  .|||
 Frog   315 AEYVLIINDVPKPLFPT--TIIP 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trolNP_001401049.1 LDLa 447..480 CDD:238060
LDLa 532..564 CDD:238060
LDLa 571..606 CDD:238060
LDLa 616..650 CDD:238060
LDLa 704..739 CDD:238060
LDLa 813..847 CDD:238060
LDLa 852..887 CDD:238060
LDLa 902..936 CDD:238060
LDLa 956..990 CDD:238060
LDLa 997..1030 CDD:238060
LDLa 1033..1067 CDD:238060
LDLa 1072..1105 CDD:238060
LDLa 1133..1165 CDD:238060
LDLa 1182..1215 CDD:238060
LDLa 1221..1251 CDD:238060
LDLa 1252..1286 CDD:238060
LDLa 1292..1326 CDD:238060
Ig 1344..1405 CDD:472250
Ig strand B 1355..1359 CDD:409353
Ig strand C 1369..1372 CDD:409353
Ig strand E 1388..1392 CDD:409353
LDLa 1439..1473 CDD:238060
LDLa 1479..1513 CDD:238060
LDLa 1522..1556 CDD:238060
Ig_Perlecan_like 1574..1649 CDD:143220
Ig strand B 1577..1583 CDD:143220
Ig strand C 1590..1595 CDD:143220
Ig strand E 1613..1617 CDD:143220
Ig strand F 1626..1632 CDD:143220
Ig strand G 1641..1647 CDD:143220
Laminin_B 1748..1878 CDD:459652
EGF_Lam 1935..1989 CDD:238012
Laminin_B 2113..2249 CDD:459652
EGF_Lam <2250..2276 CDD:238012
EGF_Lam 2284..2333 CDD:238012
Laminin_EGF <2369..2399 CDD:395007
Laminin_B 2465..2599 CDD:459652
Ig_3 2688..2756 CDD:464046
Ig_3 2791..2861 CDD:464046
Ig_3 2890..2958 CDD:464046 21/86 (24%)
Ig 2987..3071 CDD:472250 24/98 (24%)
Ig strand B 3004..3008 CDD:409353 0/3 (0%)
Ig strand C 3017..3021 CDD:409353 1/3 (33%)
Ig strand E 3036..3040 CDD:409353 0/3 (0%)
Ig strand F 3050..3055 CDD:409353 2/4 (50%)
Ig strand G 3063..3066 CDD:409353 1/2 (50%)
I-set 3089..3162 CDD:400151 19/74 (26%)
Ig strand B 3094..3098 CDD:409353 1/3 (33%)
Ig strand C 3107..3111 CDD:409353 1/3 (33%)
Ig strand E 3128..3132 CDD:409353 0/3 (0%)
Ig strand F 3142..3147 CDD:409353 2/4 (50%)
Ig strand G 3155..3158 CDD:409353 0/2 (0%)
Ig 3165..3253 CDD:472250 5/8 (63%)
Ig strand B 3185..3189 CDD:409353
Ig strand C 3198..3202 CDD:409353
Ig strand E 3219..3223 CDD:409353
Ig strand F 3233..3238 CDD:409353
Ig strand G 3246..3249 CDD:409353
Ig 3298..3355 CDD:472250
Ig strand B 3301..3305 CDD:409353
Ig strand C 3313..3316 CDD:409353
Ig strand E 3333..3336 CDD:409353
IG_like 3381..3457 CDD:214653
Ig strand B 3390..3394 CDD:409353
Ig strand C 3403..3407 CDD:409353
Ig strand F 3437..3442 CDD:409353
IG_like 3475..>3536 CDD:214653
Ig strand B 3480..3484 CDD:409353
Ig strand C 3491..3503 CDD:409353
Ig strand E 3519..3523 CDD:409353
Ig 3613..3675 CDD:472250
Ig strand B 3625..3629 CDD:409353
Ig strand C 3637..3642 CDD:409353
Ig strand E 3658..3662 CDD:409353
IG_like 3706..3772 CDD:214653
Ig strand B 3714..3718 CDD:409353
Ig strand C 3727..3731 CDD:409353
Ig strand E 3746..3750 CDD:409353
Ig strand F 3760..3765 CDD:409353
Ig strand G 3774..3777 CDD:409353
LamG 3794..3939 CDD:238058
EGF 3962..3994 CDD:394967
LamG 4042..4195 CDD:238058
EGF_CA 4254..4286 CDD:238011
LamG 4295..4448 CDD:238058
cadm2XP_031751706.1 IgV_1_Necl-3 34..129 CDD:409498 23/106 (22%)
Ig strand A 34..37 CDD:409498 0/2 (0%)
FR1 35..53 CDD:409498 4/26 (15%)
Ig strand A' 38..44 CDD:409498 0/5 (0%)
Ig strand B 46..54 CDD:409498 2/15 (13%)
CDR1 54..59 CDD:409498 1/4 (25%)
FR2 60..67 CDD:409498 1/6 (17%)
Ig strand C 60..66 CDD:409498 0/5 (0%)
CDR2 68..79 CDD:409498 1/10 (10%)
Ig strand C' 70..74 CDD:409498 0/3 (0%)
Ig strand C' 76..79 CDD:409498 0/2 (0%)
FR3 80..115 CDD:409498 11/34 (32%)
Ig strand D 84..91 CDD:409498 1/6 (17%)
Ig strand E 94..100 CDD:409498 0/5 (0%)
Ig strand F 107..115 CDD:409498 4/7 (57%)
CDR3 116..119 CDD:409498 0/2 (0%)
Ig strand G 119..129 CDD:409498 2/12 (17%)
FR4 121..128 CDD:409498 2/6 (33%)
IgI_2_Necl-3 128..231 CDD:409467 26/114 (23%)
Ig strand A 129..132 CDD:409467 0/2 (0%)
Ig strand A' 135..139 CDD:409467 1/3 (33%)
Ig strand B 148..158 CDD:409467 2/9 (22%)
Ig strand C 161..170 CDD:409467 3/8 (38%)
Ig strand C' 171..174 CDD:409467 0/2 (0%)
Ig strand D 176..183 CDD:409467 1/6 (17%)
Ig strand E 189..199 CDD:409467 1/9 (11%)
Ig strand F 207..215 CDD:409467 2/9 (22%)
Ig strand G 223..230 CDD:409467 1/6 (17%)
Ig_3 235..308 CDD:464046 23/75 (31%)
4.1m 394..412 CDD:128590
Blue background indicates that the domain is not in the aligned region.

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