DRSC/TRiP Functional Genomics Resources

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Protein Alignment trol and LanB2

DIOPT Version :9

Sequence 1:NP_001027038.3 Gene:trol / 45320 FlyBaseID:FBgn0284408 Length:4479 Species:Drosophila melanogaster
Sequence 2:NP_001287009.1 Gene:LanB2 / 39118 FlyBaseID:FBgn0267348 Length:1639 Species:Drosophila melanogaster


Alignment Length:904 Identity:222/904 - (24%)
Similarity:324/904 - (35%) Gaps:302/904 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly  1849 STAREVDLINIALDSAGTADKGLGSASLVEK------C-QCPPGYVGDSCESCASG-YVRQPGGP 1905
            ||:.||:... |.:..|.|||....|:|..:      | .|.....|.:||.|... |:|..   
  Fly   348 STSTEVNECK-ACNCNGLADKCFFDANLFNRTGHGGHCLDCRENRDGPNCERCKENFYMRDD--- 408

  Fly  1906 WLGHCVPFIPDSCPSGTYGDPRRGVPCKECPCPLTGSNNFASGCQQSPDGDVVCRCNEGYTGRRC 1970
              |:||                      .|.|...||.:.    |.:..|.  |:|..|.||.:|
  Fly   409 --GYCV----------------------NCACDPVGSRSL----QCNSHGK--CQCKPGVTGDKC 443

  Fly  1971 EQCAAG-YQGNP-------LAAGGICRRIPDTSCNVDGTYSVHSNGTCQCKDSVIGEQCDTCKSK 2027
            ::|... ||..|       ..:||..:..|  :|:.:       .|.|.||::|.|.:|:.||..
  Fly   444 DRCDNNYYQFGPHGCQQCGCDSGGSHQNTP--ACDTE-------TGICFCKENVEGRRCNECKPG 499

  Fly  2028 SFHLNSFTYTGCIECFCSGVGLDCDSSTWYR-DQVTSTFGRSR------------VDHGFVLVTN 2079
            .|:|:.....||..|||.|...:|.::..|. ..|||.|.:.:            ||   :....
  Fly   500 FFNLDKNNRFGCTPCFCYGHTSECMTAPGYSIVSVTSNFNKFKERWTAADLNQREVD---IKYNQ 561

  Fly  2080 YMQPTPDTVPVSMAAEPNALSFIGSADQSGNTLYWSLPAAFLGNKLSSYGGKLTYTLSYSPLPNG 2144
            |.:.                  ||:..|....:|:..|..|||::.:||...|.:.|...    |
  Fly   562 YSRS------------------IGTTAQGNEHVYFQAPDRFLGDQRASYNRDLKFKLQLV----G 604

  Fly  2145 IMSRNSAPDVVIK-SGEDLRLIHYRKSQVVPSV-ANTYSVEIKES---AWQ-----RGDEVVANR 2199
            .::.....||::: :|..:.|..:.:...:|.. ...|:..:.|.   .||     ||       
  Fly   605 QVANTGVSDVILEGAGSRISLPIFAQGNGIPDQGVKEYTFRLHEHHDYQWQPSQSARG------- 662

  Fly  2200 EHVLMALSDITAIYIKATYTTSTKEASLRQVTLDVATPTNLGTPRAVEVEQCRCPEGYLGLSCEQ 2264
              .|..||::|||.|:|||:.. .||.|..|.|..|.....|.| |..:|||.|||||||..||.
  Fly   663 --FLSILSNLTAIKIRATYSVQ-GEAILDDVELQTAHRGAAGHP-ATWIEQCTCPEGYLGQFCES 723

  Fly  2265 CAPGYARDP-EGGIYLGLCRPCECNGHSKYCNSDTGDCEECSDNTEGPSCERCAAGYVGDATRGT 2328
            |||||...| .||.::. |.||:|:||:..|:|:||.| .|..||.|.:|::||.|:.|:|..||
  Fly   724 CAPGYRHSPARGGPFMP-CIPCDCHGHADICDSETGRC-ICQHNTHGDNCDQCAKGFYGNALGGT 786

  Fly  2329 IYDCQ----PDEGYPIPSPPAPGNQTLECT--------AYCQ--IEGIY---------------- 2363
            ..||:    |::|..:..    ...|:.||        :.|:  .:|.:                
  Fly   787 PNDCKRCPCPNDGACLQI----NEDTVICTECPKGYFGSRCEQCSDGFFGDPTGLLGEVQTCKSC 847

  Fly  2364 DCRGN--------------ECL-CKRNVIGDQCDQCRPGTYGLSAQNQDG-CKECYCSGLASQCR 2412
            ||.||              ||| |..|..|:.||||..|.:|.......| |..|.|.       
  Fly   848 DCNGNVDPNAVGNCNRTTGECLKCIHNTAGEHCDQCLSGHFGDPLALPHGRCDRCSCY------- 905

  Fly  2413 SAALYRQLIPVDFILNAPLITDESGAVQDTENLIPDISRNMYTYTHTSYLPKYWSLRGSVLGNQL 2477
                                  |:|..||.:::           |....:......:.:|:|...
  Fly   906 ----------------------EAGTEQDEQSI-----------TRCDQVTGQCQCKPNVIGRDC 937

  Fly  2478 FSYGGRLSYSLIVESYGNYERGHDIVLIGNGLKLIWSRPDGNENQEEYNVRLHEDEQWTRQDRES 2542
                            |..:.|:..:..|||.:.....|.|:.|              :..||.|
  Fly   938 ----------------GECQPGYFNIRSGNGCENCLCDPVGSYN--------------STCDRYS 972

  Fly  2543 ARPASRSDFMTVLSDLQHILIRATPRVPTQSTSIGNVILESAVTTRTPGATHASDIELCQCPSGY 2607
            .:                                                        |.|..|.
  Fly   973 GQ--------------------------------------------------------CHCRPGV 981

  Fly  2608 VGTSCESCAPLHYRDASGSCSLCPCDVSNTESCDLVSGGYVECRCKARWKG---DRCRE 2663
            :|..|:.|....|..:|..|..|.||.|.::.......|  :|.|....:|   |||:|
  Fly   982 MGQRCDQCENYFYGFSSEGCKPCECDESGSKGFQCDQNG--QCPCNDNVEGRRCDRCKE 1038

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trolNP_001027038.3 LDLa 447..480 CDD:238060
LDLa 532..564 CDD:238060
LDLa 571..606 CDD:238060
LDLa 616..650 CDD:238060
LDLa 704..739 CDD:238060
LDLa 813..847 CDD:238060
LDLa 852..887 CDD:238060
LDLa 902..936 CDD:238060
LDLa 956..990 CDD:238060
LDLa 997..1030 CDD:238060
LDLa 1033..1067 CDD:238060
LDLa 1072..1105 CDD:238060
LDLa 1133..1165 CDD:238060
LDLa 1182..1215 CDD:238060
LDLa 1221..1251 CDD:238060
LDLa 1252..1286 CDD:238060
LDLa 1292..1326 CDD:238060
IG 1344..1421 CDD:214652
Ig 1344..1405 CDD:299845
LDLa 1439..1473 CDD:238060
LDLa 1479..1513 CDD:238060
LDLa 1522..1556 CDD:238060
IG_like 1566..1649 CDD:214653
Ig_Perlecan_D2_like 1574..1649 CDD:143220
Laminin_B 1748..1864 CDD:278481 5/14 (36%)
EGF_Lam 1935..1989 CDD:238012 18/61 (30%)
Laminin_B 2113..2238 CDD:278481 37/134 (28%)
EGF_Lam <2250..2276 CDD:238012 17/26 (65%)
EGF_Lam 2284..2333 CDD:238012 23/48 (48%)
Laminin_EGF <2369..2399 CDD:278482 13/31 (42%)
Laminin_B 2465..2587 CDD:278481 13/121 (11%)
I-set 2686..2772 CDD:254352
Ig_2 2689..2771 CDD:290606
Ig 2779..2865 CDD:299845
IG_like 2798..2864 CDD:214653
Ig 2882..2965 CDD:299845
IG_like 2882..2950 CDD:214653
Ig 2977..3061 CDD:299845
IG_like 2984..3058 CDD:214653
IG_like 3074..3152 CDD:214653
Ig 3086..3153 CDD:299845
I-set 3155..3243 CDD:254352
IGc2 3171..3233 CDD:197706
IG 3371..3447 CDD:214652
IGc2 3377..3437 CDD:197706
Ig 3456..3534 CDD:299845
IG 3465..>3526 CDD:214652
Ig 3603..3665 CDD:299845
IG 3610..3683 CDD:214652
IG 3696..3762 CDD:214652
Ig 3704..3771 CDD:299845
LamG 3784..3929 CDD:238058
EGF 3952..3984 CDD:278437
LamG 4032..4185 CDD:238058
Laminin_G_2 4315..4444 CDD:280389
LanB2NP_001287009.1 LamNT 61..296 CDD:214532
EGF_Lam 298..347 CDD:238012
Laminin_EGF 359..414 CDD:278482 17/81 (21%)
EGF_Lam 414..458 CDD:214543 16/49 (33%)
Laminin_EGF 461..511 CDD:278482 15/58 (26%)
LamB 572..697 CDD:214597 37/138 (27%)
TNFRSF <721..848 CDD:304602 42/132 (32%)
CRD2 724..771 CDD:276900 23/48 (48%)
EGF_Lam 743..791 CDD:238012 23/48 (48%)
Laminin_EGF 847..897 CDD:278482 16/49 (33%)
Laminin_EGF 902..953 CDD:278482 13/106 (12%)
Laminin_EGF 956..1004 CDD:278482 15/117 (13%)
Laminin_EGF 1004..1050 CDD:278482 12/37 (32%)
V_Alix_like 1122..1443 CDD:187408
Tar 1139..1521 CDD:223910
BAR 1308..1469 CDD:299863
vATP-synt_E 1474..>1629 CDD:304907
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45445134
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10574
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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