DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trol and LAMA2

DIOPT Version :10

Sequence 1:NP_001401049.1 Gene:trol / 45320 FlyBaseID:FBgn0284408 Length:4489 Species:Drosophila melanogaster
Sequence 2:NP_000417.3 Gene:LAMA2 / 3908 HGNCID:6482 Length:3122 Species:Homo sapiens


Alignment Length:177 Identity:36/177 - (20%)
Similarity:56/177 - (31%) Gaps:36/177 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   416 VDGMLATDIARLMAQIPKEEAAAPAGSNGSADPTVRGGAFSQTTEAETPFGFGRGEGFDKGADEA 480
            |:.:|..||......:..|:         |.:..:........||.|...      ..:...|..
Human     8 VNSLLPDDIMDTAITLVDED---------SIEAVIVSSPIPMETELEEIV------NINSTGDST 57

  Fly   481 EWVVSRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNS-----------------VLGKVW 528
            ...:|.|..|..|...:...||..:| :|.....||...|:.                 :|.||.
Human    58 ATPISTEPITVYSNHTNQVAVNTTVS-KADSNTTVKPAFPSGLQKLGAQTPVTISANQIILNKVS 121

  Fly   529 KLADIDKDGQ-LDADEFALANYLINLKLEGHEIPSELPKHLIPPSKR 574
            :.:|:....| |..|...|  .|..|...|..|...||...:|.:::
Human   122 QTSDLKLGNQTLKPDGQKL--ILTTLGKSGSPIVLALPHSQLPQAQK 166

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trolNP_001401049.1 LDLa 447..480 CDD:238060 4/32 (13%)
LDLa 532..564 CDD:238060 9/32 (28%)
LDLa 571..606 CDD:238060 0/4 (0%)
LDLa 616..650 CDD:238060
LDLa 704..739 CDD:238060
LDLa 813..847 CDD:238060
LDLa 852..887 CDD:238060
LDLa 902..936 CDD:238060
LDLa 956..990 CDD:238060
LDLa 997..1030 CDD:238060
LDLa 1033..1067 CDD:238060
LDLa 1072..1105 CDD:238060
LDLa 1133..1165 CDD:238060
LDLa 1182..1215 CDD:238060
LDLa 1221..1251 CDD:238060
LDLa 1252..1286 CDD:238060
LDLa 1292..1326 CDD:238060
Ig 1344..1405 CDD:472250
Ig strand B 1355..1359 CDD:409353
Ig strand C 1369..1372 CDD:409353
Ig strand E 1388..1392 CDD:409353
LDLa 1439..1473 CDD:238060
LDLa 1479..1513 CDD:238060
LDLa 1522..1556 CDD:238060
Ig_Perlecan_like 1574..1649 CDD:143220
Ig strand B 1577..1583 CDD:143220
Ig strand C 1590..1595 CDD:143220
Ig strand E 1613..1617 CDD:143220
Ig strand F 1626..1632 CDD:143220
Ig strand G 1641..1647 CDD:143220
Laminin_B 1748..1878 CDD:459652
EGF_Lam 1935..1989 CDD:238012
Laminin_B 2113..2249 CDD:459652
EGF_Lam <2250..2276 CDD:238012
EGF_Lam 2284..2333 CDD:238012
Laminin_EGF <2369..2399 CDD:395007
Laminin_B 2465..2599 CDD:459652
Ig_3 2688..2756 CDD:464046
Ig_3 2791..2861 CDD:464046
Ig_3 2890..2958 CDD:464046
Ig 2987..3071 CDD:472250
Ig strand B 3004..3008 CDD:409353
Ig strand C 3017..3021 CDD:409353
Ig strand E 3036..3040 CDD:409353
Ig strand F 3050..3055 CDD:409353
Ig strand G 3063..3066 CDD:409353
I-set 3089..3162 CDD:400151
Ig strand B 3094..3098 CDD:409353
Ig strand C 3107..3111 CDD:409353
Ig strand E 3128..3132 CDD:409353
Ig strand F 3142..3147 CDD:409353
Ig strand G 3155..3158 CDD:409353
Ig 3165..3253 CDD:472250
Ig strand B 3185..3189 CDD:409353
Ig strand C 3198..3202 CDD:409353
Ig strand E 3219..3223 CDD:409353
Ig strand F 3233..3238 CDD:409353
Ig strand G 3246..3249 CDD:409353
Ig 3298..3355 CDD:472250
Ig strand B 3301..3305 CDD:409353
Ig strand C 3313..3316 CDD:409353
Ig strand E 3333..3336 CDD:409353
IG_like 3381..3457 CDD:214653
Ig strand B 3390..3394 CDD:409353
Ig strand C 3403..3407 CDD:409353
Ig strand F 3437..3442 CDD:409353
IG_like 3475..>3536 CDD:214653
Ig strand B 3480..3484 CDD:409353
Ig strand C 3491..3503 CDD:409353
Ig strand E 3519..3523 CDD:409353
Ig 3613..3675 CDD:472250
Ig strand B 3625..3629 CDD:409353
Ig strand C 3637..3642 CDD:409353
Ig strand E 3658..3662 CDD:409353
IG_like 3706..3772 CDD:214653
Ig strand B 3714..3718 CDD:409353
Ig strand C 3727..3731 CDD:409353
Ig strand E 3746..3750 CDD:409353
Ig strand F 3760..3765 CDD:409353
Ig strand G 3774..3777 CDD:409353
LamG 3794..3939 CDD:238058
EGF 3962..3994 CDD:394967
LamG 4042..4195 CDD:238058
EGF_CA 4254..4286 CDD:238011
LamG 4295..4448 CDD:238058
LAMA2NP_000417.3 LamNT 37..285 CDD:214532 30/139 (22%)
EGF_Lam 287..334 CDD:238012
Laminin_EGF 414..471 CDD:395007
Laminin_EGF 469..515 CDD:395007
LamB 578..710 CDD:214597
EGF_Lam 756..805 CDD:238012
Laminin_EGF 807..862 CDD:395007
EGF_Lam 864..916 CDD:238012
EGF_Lam 917..965 CDD:238012
EGF_Lam 967..1011 CDD:214543
EGF_Lam 1014..1057 CDD:214543
Laminin_EGF 1060..1108 CDD:395007
Laminin_EGF 1106..1163 CDD:395007
LamB 1229..1364 CDD:214597
Laminin_EGF 1420..1466 CDD:395007
Laminin_EGF 1469..1524 CDD:395007
EGF_Lam 1527..1574 CDD:238012
Domain II and I 1574..2144
Laminin_I 1593..1852 CDD:310534
SMC_prok_B 1718..>2077 CDD:274008
Laminin_II 2037..2173 CDD:368703
Laminin_G_1 2174..2314 CDD:395008
Laminin_G_1 2368..2507 CDD:395008
Laminin_G_1 2554..2695 CDD:395008
Laminin_G_1 2793..2921 CDD:395008
LamG 2941..3093 CDD:238058
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 3043..3063
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.