DRSC/TRiP Functional Genomics Resources

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Protein Alignment trol and Hspg2

DIOPT Version :9

Sequence 1:NP_001027038.3 Gene:trol / 45320 FlyBaseID:FBgn0284408 Length:4479 Species:Drosophila melanogaster
Sequence 2:XP_038967228.1 Gene:Hspg2 / 313641 RGDID:621770 Length:4551 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trolNP_001027038.3 LDLa 447..480 CDD:238060
LDLa 532..564 CDD:238060
LDLa 571..606 CDD:238060
LDLa 616..650 CDD:238060
LDLa 704..739 CDD:238060
LDLa 813..847 CDD:238060
LDLa 852..887 CDD:238060
LDLa 902..936 CDD:238060
LDLa 956..990 CDD:238060
LDLa 997..1030 CDD:238060
LDLa 1033..1067 CDD:238060
LDLa 1072..1105 CDD:238060
LDLa 1133..1165 CDD:238060
LDLa 1182..1215 CDD:238060
LDLa 1221..1251 CDD:238060
LDLa 1252..1286 CDD:238060
LDLa 1292..1326 CDD:238060
IG 1344..1421 CDD:214652
Ig 1344..1405 CDD:299845
LDLa 1439..1473 CDD:238060
LDLa 1479..1513 CDD:238060
LDLa 1522..1556 CDD:238060
IG_like 1566..1649 CDD:214653
Ig_Perlecan_D2_like 1574..1649 CDD:143220
Laminin_B 1748..1864 CDD:278481
EGF_Lam 1935..1989 CDD:238012
Laminin_B 2113..2238 CDD:278481
EGF_Lam <2250..2276 CDD:238012
EGF_Lam 2284..2333 CDD:238012
Laminin_EGF <2369..2399 CDD:278482
Laminin_B 2465..2587 CDD:278481
I-set 2686..2772 CDD:254352
Ig_2 2689..2771 CDD:290606
Ig 2779..2865 CDD:299845
IG_like 2798..2864 CDD:214653
Ig 2882..2965 CDD:299845
IG_like 2882..2950 CDD:214653
Ig 2977..3061 CDD:299845
IG_like 2984..3058 CDD:214653
IG_like 3074..3152 CDD:214653
Ig 3086..3153 CDD:299845
I-set 3155..3243 CDD:254352
IGc2 3171..3233 CDD:197706
IG 3371..3447 CDD:214652
IGc2 3377..3437 CDD:197706
Ig 3456..3534 CDD:299845
IG 3465..>3526 CDD:214652
Ig 3603..3665 CDD:299845
IG 3610..3683 CDD:214652
IG 3696..3762 CDD:214652
Ig 3704..3771 CDD:299845
LamG 3784..3929 CDD:238058
EGF 3952..3984 CDD:278437
LamG 4032..4185 CDD:238058
Laminin_G_2 4315..4444 CDD:280389
Hspg2XP_038967228.1 SEA 80..194 CDD:413344
LDLa 216..251 CDD:238060
LDLa 301..332 CDD:197566
LDLa 346..375 CDD:238060
LDLa 384..419 CDD:238060
Ig_Perlecan_like 437..514 CDD:143220
Ig strand B 440..444 CDD:143220
Ig strand C 453..457 CDD:143220
Ig strand E 478..482 CDD:143220
Ig strand F 492..497 CDD:143220
Ig strand G 506..509 CDD:143220
LamB 606..732 CDD:214597
EGF_Lam 780..822 CDD:238012
EGF_Lam 829..886 CDD:238012
Laminin_EGF 895..937 CDD:395007
Laminin_B 1006..1140 CDD:395006
EGF_Lam 1174..1223 CDD:238012
EGF_Lam 1224..1280 CDD:238012
Laminin_EGF 1291..1338 CDD:395007
Laminin_B 1555..1687 CDD:395006
EGF_Lam 1722..1770 CDD:238012
EGF_Lam 1771..1828 CDD:238012
Ig strand A 1835..1840 CDD:409353
IG_like 1841..1921 CDD:214653
Ig strand A' 1843..1847 CDD:409353
Ig strand B 1850..1860 CDD:409353
Ig strand C 1865..1872 CDD:409353
Ig strand C' 1873..1876 CDD:409353
Ig strand E 1887..1893 CDD:409353
Ig strand F 1900..1908 CDD:409353
Ig strand G 1911..1919 CDD:409353
IgI_Perlecan_like 1929..2014 CDD:409412
Ig strand B 1947..1951 CDD:409412
Ig strand C 1961..1965 CDD:409412
Ig strand E 1981..1985 CDD:409412
Ig strand F 1995..2000 CDD:409412
Ig strand G 2008..2011 CDD:409412
Ig 2024..2108 CDD:416386
Ig strand A' 2032..2035 CDD:409353
Ig strand B 2041..2048 CDD:409353
Ig strand C 2054..2058 CDD:409353
Ig strand C' 2060..2062 CDD:409353
Ig strand D 2068..2072 CDD:409353
Ig strand E 2074..2078 CDD:409353
Ig strand F 2087..2095 CDD:409353
Ig strand G 2098..2108 CDD:409353
I-set 2114..2200 CDD:400151
Ig strand A' 2122..2126 CDD:409353
Ig strand B 2129..2139 CDD:409353
Ig strand C 2144..2150 CDD:409353
Ig strand C' 2151..2154 CDD:409353
Ig strand E 2166..2172 CDD:409353
Ig strand F 2179..2187 CDD:409353
IG_like 2215..2292 CDD:214653
Ig strand B 2226..2230 CDD:409353
Ig strand C 2239..2243 CDD:409353
Ig strand E 2259..2262 CDD:409353
Ig strand F 2272..2277 CDD:409353
Ig strand G 2285..2288 CDD:409353
IG_like 2316..2389 CDD:214653
Ig strand B 2327..2331 CDD:409353
Ig strand C 2338..2342 CDD:409353
Ig strand F 2371..2376 CDD:409353
Ig strand G 2382..2385 CDD:409353
Ig 2404..2484 CDD:416386
Ig strand C 2434..2438 CDD:409353
Ig strand E 2453..2457 CDD:409353
Ig strand F 2467..2472 CDD:409353
Ig strand G 2481..2484 CDD:409353
IG_like 2506..2581 CDD:214653
Ig strand C 2530..2534 CDD:409353
Ig strand E 2549..2553 CDD:409353
Ig strand F 2563..2568 CDD:409353
IG 2602..2679 CDD:214652
IG_like 2707..2776 CDD:214653
Ig strand B 2710..2714 CDD:409353
Ig strand C 2722..2727 CDD:409353
Ig strand E 2743..2746 CDD:409353
Ig strand F 2756..2761 CDD:409353
Ig strand G 2769..2772 CDD:409353
IGc2 2802..2861 CDD:197706
Ig strand C 2819..2823 CDD:409353
Ig strand E 2838..2842 CDD:409353
Ig strand F 2852..2857 CDD:409353
IG 2892..2969 CDD:214652
IG_like 2994..3066 CDD:214653
Ig strand B 3000..3004 CDD:409353
Ig strand C 3013..3017 CDD:409353
Ig strand E 3032..3036 CDD:409353
Ig strand F 3046..3051 CDD:409353
Ig strand G 3059..3062 CDD:409353
IG 3087..3165 CDD:214652
Ig 3178..3264 CDD:416386
Ig strand A 3178..3181 CDD:409353
Ig strand A' 3186..3190 CDD:409353
Ig strand B 3195..3202 CDD:409353
Ig strand C 3208..3215 CDD:409353
Ig strand D 3223..3226 CDD:409353
Ig strand E 3230..3236 CDD:409353
Ig strand F 3243..3250 CDD:409353
Ig strand G 3256..3264 CDD:409353
Ig strand A 3267..3270 CDD:409353
IG_like 3276..3357 CDD:214653
Ig strand A' 3276..3279 CDD:409353
Ig strand B 3285..3293 CDD:409353
Ig strand C 3299..3303 CDD:409353
Ig strand C' 3306..3309 CDD:409353
Ig strand D 3315..3319 CDD:409353
Ig strand E 3323..3328 CDD:409353
Ig strand F 3336..3344 CDD:409353
Ig strand G 3347..3357 CDD:409353
Ig_3 3367..3437 CDD:404760
Ig strand A' 3375..3378 CDD:409353
Ig strand B 3384..3391 CDD:409353
Ig strand C 3397..3402 CDD:409353
Ig strand C' 3405..3407 CDD:409353
Ig strand D 3410..3414 CDD:409353
Ig strand E 3416..3420 CDD:409353
Ig strand F 3429..3437 CDD:409353
Ig strand G 3440..3450 CDD:409353
Ig 3454..3537 CDD:416386
Ig strand B 3471..3475 CDD:409353
Ig strand C 3484..3488 CDD:409353
Ig strand F 3517..3522 CDD:409353
Ig 3560..3638 CDD:416386
Ig strand A' 3563..3567 CDD:409353
Ig strand B 3570..3579 CDD:409353
Ig strand C 3585..3590 CDD:409353
Ig strand C' 3593..3596 CDD:409353
Ig strand E 3603..3610 CDD:409353
Ig strand F 3617..3625 CDD:409353
Ig strand G 3628..3638 CDD:409353
Ig 3662..3722 CDD:409353
Ig strand B 3662..3665 CDD:409353
Ig strand C 3674..3678 CDD:409353
Ig strand E 3693..3697 CDD:409353
Ig strand F 3707..3712 CDD:409353
I-set 3731..3813 CDD:400151
Ig strand A 3733..3736 CDD:409353
Ig strand A' 3738..3742 CDD:409353
Ig strand B 3745..3754 CDD:409353
Ig strand C 3760..3765 CDD:409353
Ig strand C' 3768..3772 CDD:409353
Ig strand E 3778..3785 CDD:409353
Ig strand F 3792..3800 CDD:409353
Ig strand G 3803..3813 CDD:409353
LamG 3820..3986 CDD:238058
EGF_CA 4009..4042 CDD:238011
LamG 4095..4244 CDD:238058
EGF 4269..4299 CDD:394967
EGF_CA 4306..4337 CDD:238011
LamG 4364..4522 CDD:238058
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 102 1.000 Domainoid score I6688
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG46672
OrthoDB 1 1.010 - - D17288at33208
OrthoFinder 1 1.000 - - FOG0006846
OrthoInspector 1 1.000 - - oto96644
orthoMCL 1 0.900 - - OOG6_107789
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4935
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.830

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