DRSC/TRiP Functional Genomics Resources

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Protein Alignment trol and Cntn2

DIOPT Version :10

Sequence 1:NP_001401049.1 Gene:trol / 45320 FlyBaseID:FBgn0284408 Length:4489 Species:Drosophila melanogaster
Sequence 2:NP_037016.2 Gene:Cntn2 / 25356 RGDID:3821 Length:1040 Species:Rattus norvegicus


Alignment Length:1098 Identity:227/1098 - (20%)
Similarity:353/1098 - (32%) Gaps:359/1098 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  2650 CRCKA------RWK----------GDRCREIDTN----DPTDIGTEDPVLTQIIVSIQKPEITIV 2694
            ||.:|      |||          |.|.:.:..|    .||.  |:|..:.|.:.|  .|..|:|
  Rat    63 CRARASPPATYRWKMNGTDMNLEPGSRHQLMGGNLVIMSPTK--TQDAGVYQCLAS--NPVGTVV 123

  Fly  2695 --------------------PV----GGSMTLSCSG-------RMRWSNSPVIVNWYKENSRLPE 2728
                                ||    |..:.|.|:.       ..||     ::|      ..|.
  Rat   124 SKEAVLRFGFLQEFSKEERDPVKTHEGWGVMLPCNPPAHYPGLSYRW-----LLN------EFPN 177

  Fly  2729 NVEVQG--------GNLYLYDLQVSDSGVYICQAVNN---ETASVFKDTVSITITRYAQEMLARY 2782
            .:...|        ||||:.....||.|.|.|.|.::   .|.|||.....:.:......:.|..
  Rat   178 FIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDPRLFAPS 242

  Fly  2783 EKDQLSPAEIVNLPSHVTFEEYVNNEIICEVLGNPAPRVTWARVDGHADAQSTRTYDNRLIFDSP 2847
            .|.:..|.....:...||.|        |...|||.||:.|.:|||....| ..|.:..|...|.
  Rat   243 IKARFPPETYALVGQQVTLE--------CFAFGNPVPRIKWRKVDGSLSPQ-WATAEPTLQIPSV 298

  Fly  2848 RKSDEGRYRCQAENDQNRDEKYVIVYVQSNPPQPPPQQDRLYITPEEINGLAGESFQLNCQFTSV 2912
            ...|||.|.|:|||.:.||.....:.||:.|                                  
  Rat   299 SFEDEGTYECEAENSKGRDTVQGRIIVQAQP---------------------------------- 329

  Fly  2913 ASLRYDWSHNGRSLSSSPARNVEIRGNTLEVRDASESDSGVYTCVAYDVRTRRNFTESARVNIDR 2977
                 :|                     |:|...:|:|.                          
  Rat   330 -----EW---------------------LKVISDTEADI-------------------------- 342

  Fly  2978 REEQPFGNKPIIESLEQNILIIQGEDYSITCEASGSPYPSIKWAKVHDFM--PENVHISGNVLTI 3040
                                   |.:....|.|:|.|.|.::|.:..:.:  ...|.:....|..
  Rat   343 -----------------------GSNLRWGCAAAGKPRPMVRWLRNGEPLASQNRVEVLAGDLRF 384

  Fly  3041 YGARFENRGVYSCVAENDHGSDLSSTSIDIEP-----RERPSVKIVSAPLQTFSVGAPASLYCTV 3100
            .....|:.|:|.|||||.||:..:|..:.::.     |:.|..:::.|     :.|...|:.|..
  Rat   385 SKLSLEDSGMYQCVAENKHGTIYASAELAVQALAPDFRQNPVRRLIPA-----ARGGEISILCQP 444

  Fly  3101 EGIPDPTVEWVRVDGQPL---SPRHKIQSPGYMVIDDIQLEDSGDYECRAKNIVGEATGVATITV 3162
            ...|..|:.|.:  |..:   |.|..:.|.|.::|.:|...|.|.|.|.|:|.:|:|.....::|
  Rat   445 RAAPKATILWSK--GTEILGNSTRVTVTSDGTLIIRNISRSDEGKYTCFAENFMGKANSTGILSV 507

  Fly  3163 QEPTLVQIIPDNRDLRLTEGDELSLTCVGSGVPNPEV--EW-VNEMALKRD-------LYSPPSN 3217
            ::.|.:.:.|.:.|:.:  ||.|:|.|..|..|..::  .| :::..:..|       ..|....
  Rat   508 RDATKITLAPSSADINV--GDNLTLQCHASHDPTMDLTFTWTLDDFPIDFDKPGGHYRRASAKET 570

  Fly  3218 TAILKIYRVTKADAGIYTCHGKN--EAGSDEAHVRVEVQERRGDIGGVDDDSDRDPINYNPPQQQ 3280
            ...|.|........|.|||..:.  :..|.||.|.|                 |.|         
  Rat   571 IGDLTILNAQLRHGGKYTCMAQTVVDGTSKEATVLV-----------------RGP--------- 609

  Fly  3281 NPGIHQPGSNQLLATDIGDNVTLTCDMFQPLNTRWERVDGAPLPRNAYTIKNRLEIVRVEQQNLG 3345
             ||  .||.  ::..||||..         :...|.|......|...||::.|..    ......
  Rat   610 -PG--PPGG--VVVRDIGDTT---------VQLSWSRGFDNHSPIAKYTLQARTP----PSGKWK 656

  Fly  3346 QYRCNGIGRDGNVKTYFVKELVLMPLPRIRF---YPNIPLTVE-AGQNLDVHCQ--VENVRPED- 3403
            |.|.|.:..:||.:|  .:.|.|||.....|   ..||..|.| :|.:..:..:  |.:|.|.. 
  Rat   657 QVRTNPVNIEGNAET--AQVLGLMPWMDYEFRVSASNILGTGEPSGPSSKIRTKEAVPSVAPSGL 719

  Fly  3404 -----------VHWSTDNNRPLPS-------------------SVRIVGSVLRFV-----SITQA 3433
                       ::| |..:|...:                   :.|:.|:..::.     ||...
  Rat   720 SGGGGAPGELIINW-TPVSREYQNGDGFGYLLSFRRQGSSSWQTARVPGADAQYFVYGNDSIQPY 783

  Fly  3434 AAGEYRCSAFNQYGNRSQIARVAVKKPADFHQVPQSQLQRHREGE---NIQLQCTVTDQYGVRAQ 3495
            ...|.:..::|:.|:..:.....|....:..:|..:::.......   |:..:..:.|..|:...
  Rat   784 TPFEVKIRSYNRRGDGPESLTALVYSAEEEPRVAPAKVWAKGSSSSEMNVSWEPVLQDMNGILLG 848

  Fly  3496 DNVEFNWFRDDRRPLPNNART---DSQILVLTNLRPEDAGRYICNSYDVDRGQQLPEVSIDLQVL 3557
            ..:.: |...|.....:..||   |:...| |.|.|.       ..|.|              .:
  Rat   849 YEIRY-WKAGDNEAAADRVRTAGLDTSARV-TGLNPN-------TKYHV--------------TV 890

  Fly  3558 RAPQYPYNRFKGGVSLKDTPCMVLYICAAATPPPNSPIYLPPQL--PAKSRDYSLKLD 3613
            ||    |||...|.:......|.:      .|||..|   |..:  ...|...|||.|
  Rat   891 RA----YNRAGTGPASPSADAMTV------KPPPRRP---PGNISWTFSSSSLSLKWD 935

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trolNP_001401049.1 LDLa 447..480 CDD:238060
LDLa 532..564 CDD:238060
LDLa 571..606 CDD:238060
LDLa 616..650 CDD:238060
LDLa 704..739 CDD:238060
LDLa 813..847 CDD:238060
LDLa 852..887 CDD:238060
LDLa 902..936 CDD:238060
LDLa 956..990 CDD:238060
LDLa 997..1030 CDD:238060
LDLa 1033..1067 CDD:238060
LDLa 1072..1105 CDD:238060
LDLa 1133..1165 CDD:238060
LDLa 1182..1215 CDD:238060
LDLa 1221..1251 CDD:238060
LDLa 1252..1286 CDD:238060
LDLa 1292..1326 CDD:238060
Ig 1344..1405 CDD:472250
Ig strand B 1355..1359 CDD:409353
Ig strand C 1369..1372 CDD:409353
Ig strand E 1388..1392 CDD:409353
LDLa 1439..1473 CDD:238060
LDLa 1479..1513 CDD:238060
LDLa 1522..1556 CDD:238060
Ig_Perlecan_like 1574..1649 CDD:143220
Ig strand B 1577..1583 CDD:143220
Ig strand C 1590..1595 CDD:143220
Ig strand E 1613..1617 CDD:143220
Ig strand F 1626..1632 CDD:143220
Ig strand G 1641..1647 CDD:143220
Laminin_B 1748..1878 CDD:459652
EGF_Lam 1935..1989 CDD:238012
Laminin_B 2113..2249 CDD:459652
EGF_Lam <2250..2276 CDD:238012
EGF_Lam 2284..2333 CDD:238012
Laminin_EGF <2369..2399 CDD:395007
Laminin_B 2465..2599 CDD:459652
Ig_3 2688..2756 CDD:464046 23/106 (22%)
Ig_3 2791..2861 CDD:464046 23/69 (33%)
Ig_3 2890..2958 CDD:464046 5/67 (7%)
Ig 2987..3071 CDD:472250 20/85 (24%)
Ig strand B 3004..3008 CDD:409353 0/3 (0%)
Ig strand C 3017..3021 CDD:409353 0/3 (0%)
Ig strand E 3036..3040 CDD:409353 1/3 (33%)
Ig strand F 3050..3055 CDD:409353 2/4 (50%)
Ig strand G 3063..3066 CDD:409353 0/2 (0%)
I-set 3089..3162 CDD:400151 21/75 (28%)
Ig strand B 3094..3098 CDD:409353 1/3 (33%)
Ig strand C 3107..3111 CDD:409353 1/3 (33%)
Ig strand E 3128..3132 CDD:409353 1/3 (33%)
Ig strand F 3142..3147 CDD:409353 2/4 (50%)
Ig strand G 3155..3158 CDD:409353 0/2 (0%)
Ig 3165..3253 CDD:472250 24/99 (24%)
Ig strand B 3185..3189 CDD:409353 2/3 (67%)
Ig strand C 3198..3202 CDD:409353 1/6 (17%)
Ig strand E 3219..3223 CDD:409353 1/3 (33%)
Ig strand F 3233..3238 CDD:409353 3/4 (75%)
Ig strand G 3246..3249 CDD:409353 2/2 (100%)
Ig 3298..3355 CDD:472250 11/56 (20%)
Ig strand B 3301..3305 CDD:409353 0/3 (0%)
Ig strand C 3313..3316 CDD:409353 0/2 (0%)
Ig strand E 3333..3336 CDD:409353 1/2 (50%)
IG_like 3381..3457 CDD:214653 16/114 (14%)
Ig strand B 3390..3394 CDD:409353 0/3 (0%)
Ig strand C 3403..3407 CDD:409353 0/15 (0%)
Ig strand F 3437..3442 CDD:409353 1/4 (25%)
IG_like 3475..>3536 CDD:214653 12/66 (18%)
Ig strand B 3480..3484 CDD:409353 0/3 (0%)
Ig strand C 3491..3503 CDD:409353 1/11 (9%)
Ig strand E 3519..3523 CDD:409353 0/3 (0%)
Ig 3613..3675 CDD:472250 1/1 (100%)
Ig strand B 3625..3629 CDD:409353
Ig strand C 3637..3642 CDD:409353
Ig strand E 3658..3662 CDD:409353
IG_like 3706..3772 CDD:214653
Ig strand B 3714..3718 CDD:409353
Ig strand C 3727..3731 CDD:409353
Ig strand E 3746..3750 CDD:409353
Ig strand F 3760..3765 CDD:409353
Ig strand G 3774..3777 CDD:409353
LamG 3794..3939 CDD:238058
EGF 3962..3994 CDD:394967
LamG 4042..4195 CDD:238058
EGF_CA 4254..4286 CDD:238011
LamG 4295..4448 CDD:238058
Cntn2NP_037016.2 Ig 37..133 CDD:472250 18/73 (25%)
Ig strand B 59..63 CDD:409353 227/1098 (21%)
Ig strand C 72..76 CDD:409353 1/3 (33%)
Ig strand E 95..99 CDD:409353 1/3 (33%)
Ig strand F 110..115 CDD:409353 1/4 (25%)
Ig strand G 124..127 CDD:409353 0/2 (0%)
Ig2_Contactin-2-like 141..230 CDD:409392 24/99 (24%)
Ig strand A 143..148 CDD:409392 2/4 (50%)
Ig strand B 152..158 CDD:409392 1/5 (20%)
Ig strand C 166..172 CDD:409392 2/10 (20%)
Ig strand C' 177..179 CDD:409392 0/1 (0%)
Ig strand D 184..189 CDD:409392 0/4 (0%)
Ig strand E 192..196 CDD:409392 3/3 (100%)
Ig strand F 206..214 CDD:409392 3/7 (43%)
Ig strand G 218..230 CDD:409392 4/11 (36%)
Ig 241..326 CDD:472250 29/93 (31%)
Ig strand B 259..263 CDD:409353 3/11 (27%)
Ig strand C 272..276 CDD:409353 1/3 (33%)
Ig strand E 291..295 CDD:409353 1/3 (33%)
Ig strand F 305..310 CDD:409353 2/4 (50%)
Ig strand G 318..321 CDD:409353 0/2 (0%)
Ig4_Contactin-2-like 330..414 CDD:143205 25/153 (16%)
Ig strand A 330..333 CDD:143205 1/23 (4%)
Ig strand A' 337..341 CDD:143205 1/3 (33%)
Ig strand B 345..353 CDD:143205 1/7 (14%)
Ig strand C 359..364 CDD:143205 1/4 (25%)
Ig strand C' 366..369 CDD:143205 0/2 (0%)
Ig strand D 374..378 CDD:143205 1/3 (33%)
Ig strand E 380..385 CDD:143205 1/4 (25%)
Ig strand F 394..401 CDD:143205 4/6 (67%)
Ig strand G 405..414 CDD:143205 1/8 (13%)
Ig5_Contactin 419..507 CDD:409358 24/94 (26%)
Ig strand A 419..424 CDD:409358 1/4 (25%)
Ig strand A' 427..432 CDD:409358 0/4 (0%)
Ig strand B 436..443 CDD:409358 1/6 (17%)
Ig strand C 451..455 CDD:409358 1/3 (33%)
Ig strand D 469..472 CDD:409358 0/2 (0%)
Ig strand E 473..478 CDD:409358 1/4 (25%)
Ig strand F 486..494 CDD:409358 4/7 (57%)
Ig strand G 500..507 CDD:409358 0/6 (0%)
Ig 509..605 CDD:472250 22/97 (23%)
Ig strand B 528..532 CDD:409353 2/3 (67%)
Ig strand C 543..547 CDD:409353 0/3 (0%)
Ig strand E 572..576 CDD:409353 1/3 (33%)
Ig strand F 586..591 CDD:409353 3/4 (75%)
Ig strand G 599..602 CDD:409353 1/2 (50%)
FN3 620..707 CDD:238020 26/101 (26%)
FN3 728..802 CDD:238020 10/74 (14%)
Cell attachment site. /evidence=ECO:0000255 796..798 0/1 (0%)
FN3 817..909 CDD:238020 20/118 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 895..921 8/34 (24%)
Blue background indicates that the domain is not in the aligned region.

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