DRSC/TRiP Functional Genomics Resources

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Protein Alignment trol and gldi-2

DIOPT Version :10

Sequence 1:NP_001401049.1 Gene:trol / 45320 FlyBaseID:FBgn0284408 Length:4489 Species:Drosophila melanogaster
Sequence 2:NP_872023.2 Gene:gldi-2 / 174116 WormBaseID:WBGene00020481 Length:911 Species:Caenorhabditis elegans


Alignment Length:785 Identity:194/785 - (24%)
Similarity:288/785 - (36%) Gaps:268/785 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   901 KC-LESQYQCGDGSCISGYKRCNGIHDCADASDEYNCIYDYEDTYDTDPNNNPLNE-CDILEFEC 963
            || ..:.:||.||.||....||:|..||.:..||.||               |::| |...|.:|
 Worm    31 KCDATNSFQCQDGRCIPMSWRCDGDIDCQNEEDEKNC---------------PISEVCGAEEHKC 80

  Fly   964 ----------DYSQCLPLEKKCDGYADCEDMSDELECQSYTDHCLESEFECD------SYCLPRD 1012
                      :..:|:|.:..|||..||||.|||.:|::.:  |.|.:|:|:      |.|:|..
 Worm    81 GEVKSARSSLERFKCIPNKWVCDGEFDCEDKSDEFQCKNVS--CQEKQFQCEELSGDYSLCIPET 143

  Fly  1013 QLCNGIPNCQDGSDERNCTF----CREDAYLCNTGECVADNQRCNGIADCADGSDE-----RHCA 1068
            .:|:|..:|.:|.||:|||.    |.::.:.|:.|.|:..|..|:|..||:|||||     .:|.
 Worm   144 WVCDGQRDCTNGKDEQNCTSKTSKCPDNNFQCSNGNCIFKNWVCDGEEDCSDGSDELLTAPSNCN 208

  Fly  1069 RI--YCPPNKL-AC-NGTCVSRRIKCDGIRDCLDGYDEMYCPETNNHYPTQNVNVIRPKLGPNPI 1129
            |.  .|||.:: .| :|.|:..|.:||...||.|..||..|                     ..|
 Worm   209 RTVNQCPPGEMWKCGSGECIPSRWRCDAEVDCKDHSDEKNC---------------------TAI 252

  Fly  1130 PKSCR-PHEWQC-ANLECIDSSLQCNEIKDCSDGSDEELSVCFGTATTRLKPSDCSPEQFYCDES 1192
            ..:|: ..|:.| |:..||:.:..|:...||||||||:     ..|..|   ::|...:..|..|
 Worm   253 QHTCKLAEEFACKASHNCINKAFVCDGELDCSDGSDED-----DCADVR---TECKSGERTCPAS 309

  Fly  1193 ------------CYNRSVRCNGHVDCSDGSDEVGCSLPCP-------QHQCPSG--RCYTESERC 1236
                        |...|..|||..||.||.||..|::..|       :::|||.  :|...|:  
 Worm   310 YGAYGAESGHVVCIPASSWCNGEEDCPDGGDEKECNMTAPVTCQKGTEYECPSTPLQCIEMSK-- 372

  Fly  1237 DRHRHCEDGSDEANCCYANQFRCNNGDCVSGSAPCNGYSECSDHSDELNCGGTQE---CLPNQFR 1298
                          .|.:.||.|.:|:          .|.||.......|..:.|   |.|:..|
 Worm   373 --------------LCASAQFDCGDGN----------MSVCSQKKIIEMCKPSSEGCVCRPSFVR 413

  Fly  1299 CN------------SGQCVSSSVRCN--GRTD--CQDSSDEQNCAADSNDRRPNQLNLKTYPDSQ 1347
            .|            :|||:..: .|.  |..|  |.:......||..:.    .|:   ::.|::
 Worm   414 GNNVCHCKDGYKLENGQCIDIN-ECEIAGVCDQICLNIPGSYRCACHAG----YQI---SFGDTK 470

  Fly  1348 IIKESREVIFRCRDEGPARAKVKWSRPGGRPLPPGFTDRN--------GRLEIPNIRVEDAGTYV 1404
            |              |..|...|....||.||.. .|:|:        .::..|           
 Worm   471 I--------------GSGRIANKCRAMGGDPLVL-LTNRHTIRQFDLVNKMHFP----------- 509

  Fly  1405 CEAVGYASYIPGQQVTVNLNVERYNDVGSRPESACTEYQATCMNGECIDKSSICDGNPDCSDASD 1469
                  .|..||..|.::.::                     :||..|           .||...
 Worm   510 ------VSSSPGSAVAMDFHI---------------------LNGTLI-----------WSDVLS 536

  Fly  1470 EQ--SCSLGLKCQPNQFMCSNSKCVDRTWRCDGENDCGDNSDETSCDPEPSGAPCRYNEFQCRSG 1532
            :|  .||:|  ...|.|:        .|..||.:::.....|:..                    
 Worm   537 KQILKCSIG--NVSNAFL--------GTDMCDKKHEIVLTGDKIH-------------------- 571

  Fly  1533 HCIPKSFQCDNVPDC---TD-GTDEVGCMAPLPIRPPPQSVSLLEYEVLELTCVATGTPTPTIVW 1593
              .|.....|.|.|.   || |.|::..   |.::...|.| |...::.|...:|.......|.|
 Worm   572 --TPDGLAVDWVHDLLFWTDGGLDQINV---LDMKNGKQRV-LYSSDLEEPRAIAVDPEVGLIFW 630

  Fly  1594 RLNWG 1598
             .:||
 Worm   631 -TDWG 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trolNP_001401049.1 LDLa 447..480 CDD:238060
LDLa 532..564 CDD:238060
LDLa 571..606 CDD:238060
LDLa 616..650 CDD:238060
LDLa 704..739 CDD:238060
LDLa 813..847 CDD:238060
LDLa 852..887 CDD:238060
LDLa 902..936 CDD:238060 14/34 (41%)
LDLa 956..990 CDD:238060 15/43 (35%)
LDLa 997..1030 CDD:238060 13/38 (34%)
LDLa 1033..1067 CDD:238060 14/38 (37%)
LDLa 1072..1105 CDD:238060 14/34 (41%)
LDLa 1133..1165 CDD:238060 14/33 (42%)
LDLa 1182..1215 CDD:238060 14/44 (32%)
LDLa 1221..1251 CDD:238060 5/31 (16%)
LDLa 1252..1286 CDD:238060 8/33 (24%)
LDLa 1292..1326 CDD:238060 11/49 (22%)
Ig 1344..1405 CDD:472250 12/68 (18%)
Ig strand B 1355..1359 CDD:409353 0/3 (0%)
Ig strand C 1369..1372 CDD:409353 1/2 (50%)
Ig strand E 1388..1392 CDD:409353 0/3 (0%)
LDLa 1439..1473 CDD:238060 6/35 (17%)
LDLa 1479..1513 CDD:238060 6/33 (18%)
LDLa 1522..1556 CDD:238060 8/37 (22%)
Ig_Perlecan_like 1574..1649 CDD:143220 6/25 (24%)
Ig strand B 1577..1583 CDD:143220 1/5 (20%)
Ig strand C 1590..1595 CDD:143220 2/4 (50%)
Ig strand E 1613..1617 CDD:143220
Ig strand F 1626..1632 CDD:143220
Ig strand G 1641..1647 CDD:143220
Laminin_B 1748..1878 CDD:459652
EGF_Lam 1935..1989 CDD:238012
Laminin_B 2113..2249 CDD:459652
EGF_Lam <2250..2276 CDD:238012
EGF_Lam 2284..2333 CDD:238012
Laminin_EGF <2369..2399 CDD:395007
Laminin_B 2465..2599 CDD:459652
Ig_3 2688..2756 CDD:464046
Ig_3 2791..2861 CDD:464046
Ig_3 2890..2958 CDD:464046
Ig 2987..3071 CDD:472250
Ig strand B 3004..3008 CDD:409353
Ig strand C 3017..3021 CDD:409353
Ig strand E 3036..3040 CDD:409353
Ig strand F 3050..3055 CDD:409353
Ig strand G 3063..3066 CDD:409353
I-set 3089..3162 CDD:400151
Ig strand B 3094..3098 CDD:409353
Ig strand C 3107..3111 CDD:409353
Ig strand E 3128..3132 CDD:409353
Ig strand F 3142..3147 CDD:409353
Ig strand G 3155..3158 CDD:409353
Ig 3165..3253 CDD:472250
Ig strand B 3185..3189 CDD:409353
Ig strand C 3198..3202 CDD:409353
Ig strand E 3219..3223 CDD:409353
Ig strand F 3233..3238 CDD:409353
Ig strand G 3246..3249 CDD:409353
Ig 3298..3355 CDD:472250
Ig strand B 3301..3305 CDD:409353
Ig strand C 3313..3316 CDD:409353
Ig strand E 3333..3336 CDD:409353
IG_like 3381..3457 CDD:214653
Ig strand B 3390..3394 CDD:409353
Ig strand C 3403..3407 CDD:409353
Ig strand F 3437..3442 CDD:409353
IG_like 3475..>3536 CDD:214653
Ig strand B 3480..3484 CDD:409353
Ig strand C 3491..3503 CDD:409353
Ig strand E 3519..3523 CDD:409353
Ig 3613..3675 CDD:472250
Ig strand B 3625..3629 CDD:409353
Ig strand C 3637..3642 CDD:409353
Ig strand E 3658..3662 CDD:409353
IG_like 3706..3772 CDD:214653
Ig strand B 3714..3718 CDD:409353
Ig strand C 3727..3731 CDD:409353
Ig strand E 3746..3750 CDD:409353
Ig strand F 3760..3765 CDD:409353
Ig strand G 3774..3777 CDD:409353
LamG 3794..3939 CDD:238058
EGF 3962..3994 CDD:394967
LamG 4042..4195 CDD:238058
EGF_CA 4254..4286 CDD:238011
LamG 4295..4448 CDD:238058
gldi-2NP_872023.2 LDLa 36..67 CDD:238060 13/30 (43%)
LDLa 73..117 CDD:238060 15/43 (35%)
LDLa 122..161 CDD:238060 13/38 (34%)
LDLa 167..199 CDD:197566 12/31 (39%)
LDLa 214..249 CDD:238060 14/34 (41%)
LDLa 261..292 CDD:238060 14/35 (40%)
LDLa <322..344 CDD:238060 11/21 (52%)
EGF_CA 433..463 CDD:214542 6/34 (18%)
LY 564..606 CDD:214531 10/66 (15%)
LY 606..649 CDD:214531 8/31 (26%)
LY 649..692 CDD:214531
LY 696..736 CDD:214531
Blue background indicates that the domain is not in the aligned region.

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