Sequence 1: | NP_001027038.3 | Gene: | trol / 45320 | FlyBaseID: | FBgn0284408 | Length: | 4479 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_032511.3 | Gene: | Lamc2 / 16782 | MGIID: | 99913 | Length: | 1193 | Species: | Mus musculus |
Alignment Length: | 1401 | Identity: | 312/1401 - (22%) |
---|---|---|---|
Similarity: | 471/1401 - (33%) | Gaps: | 460/1401 - (32%) |
- Green bases have known domain annotations that are detailed below.
Fly 1879 KC-QCPPGYVGDSCESCASGYVRQPGGPWLGHCVPFIPDSCPSGTYGDPRRGVPCKECPCPLTGS 1942
Fly 1943 NNFASGCQQSPDGDVVCRCNEGYTGRRCEQCAAGYQGNPLAAGGICRRIP---DTSCNVD--GTY 2002
Fly 2003 SVHSNGTCQCKDSVIGEQCDTCKSKSFHLNSFTYTGCIECFCSGVGLDCDSSTWYR-DQVTSTFG 2066
Fly 2067 RSRVDHGFVLVTNYMQPTPDTVPVSMAAEPNALSFIGSADQSGNTLYWSLPAAFLGNKLSSYGGK 2131
Fly 2132 LTYTLSYSPLPNGIMSRNSAPDVVIK-SGEDLRLIHYRKSQVVP-SVANTYSVEIKE---SAWQR 2191
Fly 2192 GDEVVANREHVLMALSDITAIYIKATY-TTSTKEASLRQVTLDVATPTNLGTPRAVEVEQCRCPE 2255
Fly 2256 GYLGLSCEQCAPGYARDPEGGIYLGLCRPCECNGHSKYCNSDTGDCE--------ECSD------ 2306
Fly 2307 ------------------------NTE------------GPSCERCAAGYVGD--ATRGTIYDCQ 2333
Fly 2334 PDEGYPIPSPPAPGNQTLECTAYCQIEGIYDCRGNECL-CKRNVIGDQCDQCRPGTYG--LSAQN 2395
Fly 2396 QDGCKECYCSGLASQ--------------------CRSAAL------YRQL-IPVDFILNAPLIT 2433
Fly 2434 DESGAVQDTENLIPDISRNMYTYTHTSYLPKYWSLRGSVLGNQLFSYGGRLSYSLIVESYGNYER 2498
Fly 2499 GHDIVLIGNGLKLIWSRPDGNENQEEYNVRLHEDEQWTR------QDRESARPA----------S 2547
Fly 2548 RSDFMTVLSDLQHIL--IRA-----TPRVPTQSTSIGNVILESAVTTRTPGATHASDIELCQCPS 2605
Fly 2606 GYVGTSCES--CAPLHYRDASGSCSLCPCDVSNTESCDLVSGGYVECRCKARWKGDRCREIDTND 2668
Fly 2669 PTDIGTEDPVLTQIIVSIQKPEITIVPVGGSMTLSCS------GRMRWSNSPVIVNWYKENSRLP 2727
Fly 2728 ENVEVQGGNLYLYDLQVSDSGVYICQAVNNETASVFKDTVSITITKKDQLSPAEIVNLPSHVT-- 2790
Fly 2791 FEEYVNNEIICEVLGNPAPRVTWARVDGHADAQSTRTYDNRLIFDSPRKSDEGRYRCQAENDQNR 2855
Fly 2856 DEKYVIVYVQSNPPQPPPQQDRLYITPEEINGLAGESFQL-NCQFTSVASL-----RYDWSHNGR 2914
Fly 2915 SLSSSPARNVEIRGNTLEVRDASESDSGVYTCVAYDVRTRRNFTESARVNIDRREEQPFGNKPII 2979
Fly 2980 ESLEQNILIIQGEDYSITCEASGSPYPSIKWAKVHDFMPENVHISGNVLTIYGARFENRGVYSCV 3044
Fly 3045 AE-NDHGSDLSSTSIDIEPRERPSVKIVSAPLQTFSVGAPAS------LYCTVEGIPDPTVEWVR 3102
Fly 3103 VDGQPLSPRHKIQSPGYMVIDDIQLEDSGDYECRAK 3138 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
trol | NP_001027038.3 | LDLa | 447..480 | CDD:238060 | |
LDLa | 532..564 | CDD:238060 | |||
LDLa | 571..606 | CDD:238060 | |||
LDLa | 616..650 | CDD:238060 | |||
LDLa | 704..739 | CDD:238060 | |||
LDLa | 813..847 | CDD:238060 | |||
LDLa | 852..887 | CDD:238060 | |||
LDLa | 902..936 | CDD:238060 | |||
LDLa | 956..990 | CDD:238060 | |||
LDLa | 997..1030 | CDD:238060 | |||
LDLa | 1033..1067 | CDD:238060 | |||
LDLa | 1072..1105 | CDD:238060 | |||
LDLa | 1133..1165 | CDD:238060 | |||
LDLa | 1182..1215 | CDD:238060 | |||
LDLa | 1221..1251 | CDD:238060 | |||
LDLa | 1252..1286 | CDD:238060 | |||
LDLa | 1292..1326 | CDD:238060 | |||
IG | 1344..1421 | CDD:214652 | |||
Ig | 1344..1405 | CDD:299845 | |||
LDLa | 1439..1473 | CDD:238060 | |||
LDLa | 1479..1513 | CDD:238060 | |||
LDLa | 1522..1556 | CDD:238060 | |||
IG_like | 1566..1649 | CDD:214653 | |||
Ig_Perlecan_D2_like | 1574..1649 | CDD:143220 | |||
Laminin_B | 1748..1864 | CDD:278481 | |||
EGF_Lam | 1935..1989 | CDD:238012 | 18/53 (34%) | ||
Laminin_B | 2113..2238 | CDD:278481 | 39/130 (30%) | ||
EGF_Lam | <2250..2276 | CDD:238012 | 13/25 (52%) | ||
EGF_Lam | 2284..2333 | CDD:238012 | 25/100 (25%) | ||
Laminin_EGF | <2369..2399 | CDD:278482 | 13/32 (41%) | ||
Laminin_B | 2465..2587 | CDD:278481 | 31/144 (22%) | ||
I-set | 2686..2772 | CDD:254352 | 16/91 (18%) | ||
Ig_2 | 2689..2771 | CDD:290606 | 16/87 (18%) | ||
Ig | 2779..2865 | CDD:299845 | 14/87 (16%) | ||
IG_like | 2798..2864 | CDD:214653 | 8/65 (12%) | ||
Ig | 2882..2965 | CDD:299845 | 15/88 (17%) | ||
IG_like | 2882..2950 | CDD:214653 | 13/73 (18%) | ||
Ig | 2977..3061 | CDD:299845 | 14/84 (17%) | ||
IG_like | 2984..3058 | CDD:214653 | 12/74 (16%) | ||
IG_like | 3074..3152 | CDD:214653 | 11/71 (15%) | ||
Ig | 3086..3153 | CDD:299845 | 9/53 (17%) | ||
I-set | 3155..3243 | CDD:254352 | |||
IGc2 | 3171..3233 | CDD:197706 | |||
IG | 3371..3447 | CDD:214652 | |||
IGc2 | 3377..3437 | CDD:197706 | |||
Ig | 3456..3534 | CDD:299845 | |||
IG | 3465..>3526 | CDD:214652 | |||
Ig | 3603..3665 | CDD:299845 | |||
IG | 3610..3683 | CDD:214652 | |||
IG | 3696..3762 | CDD:214652 | |||
Ig | 3704..3771 | CDD:299845 | |||
LamG | 3784..3929 | CDD:238058 | |||
EGF | 3952..3984 | CDD:278437 | |||
LamG | 4032..4185 | CDD:238058 | |||
Laminin_G_2 | 4315..4444 | CDD:280389 | |||
Lamc2 | NP_032511.3 | Laminin_EGF | 28..86 | CDD:365839 | 12/58 (21%) |
EGF_Lam | 83..127 | CDD:238012 | 19/54 (35%) | ||
Laminin_EGF | 139..184 | CDD:365839 | 15/44 (34%) | ||
Laminin_B | 245..370 | CDD:383018 | 40/135 (30%) | ||
EGF_Lam | 461..509 | CDD:238012 | 10/47 (21%) | ||
Laminin_EGF | 517..564 | CDD:365839 | 19/60 (32%) | ||
EGF_Lam | 572..>604 | CDD:238012 | 5/31 (16%) | ||
Cell attachment site. /evidence=ECO:0000255 | 586..588 | 0/1 (0%) | |||
SMC_prok_B | <614..1192 | CDD:274008 | 131/769 (17%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |