DRSC/TRiP Functional Genomics Resources

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Protein Alignment trol and cadm4

DIOPT Version :10

Sequence 1:NP_001401049.1 Gene:trol / 45320 FlyBaseID:FBgn0284408 Length:4489 Species:Drosophila melanogaster
Sequence 2:XP_002939173.1 Gene:cadm4 / 100488420 XenbaseID:XB-GENE-992659 Length:394 Species:Xenopus tropicalis


Alignment Length:410 Identity:76/410 - (18%)
Similarity:132/410 - (32%) Gaps:149/410 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly  2672 IGTEDPVLTQIIVSIQKPEITIVPVGGSMTLSC-----SGRMRWSNSPVIVNWYKENSRLPENVE 2731
            :.|...|::|   .:|...:|:|. ||:..:||     .|.:....:||....:...:|..::..
 Frog    23 LATAGTVVSQ---EVQAENVTVVE-GGTAEISCHLHQYDGSIVVIQNPVRQTLFFNGTRALKDTR 83

  Fly  2732 VQ-------GGNLYLYDLQVSDSGVYICQAVNNETASVFKDTVSITITRYAQEMLARYEKDQLSP 2789
            .|       ...::|.|.::.|.|.|.||....:|   .....::|:.......|...::..:..
 Frog    84 FQLVEFTQKVVKIHLSDAKLEDEGGYFCQLYTEDT---HHQIATLTVIVPPDNPLVEVKEQAVEG 145

  Fly  2790 AEIVNLPSHVTFEEYVNNEIIC-EVLGNPAPRVTWAR----VDGHADAQ---STRTYDNRLIFDS 2846
            .||               |:.| .....||..:.|.|    :.|....|   .|.:..|.:.|..
 Frog   146 GEI---------------ELTCISPRTRPAATLRWYRDRKELKGFTSKQENGKTFSITNSIRFSV 195

  Fly  2847 PRKSDEGRYRCQAENDQNRDEKYVIVYVQSNPPQPPPQQDRLYITPEEINGLAGESFQLNCQFTS 2911
            .||.|.....|:|.:...:.:|....|                              :|:.||  
 Frog   196 DRKDDRDIVTCEASHPALKGQKKQTQY------------------------------ELDVQF-- 228

  Fly  2912 VASLRYDWSHNGRSLSSSPARNVEIRGNTLEVRDASESDSGVYTCVAYDVRTRRNFTESARVNID 2976
                             ||..|::          .|:|                           
 Frog   229 -----------------SPTANIQ----------PSQS--------------------------- 239

  Fly  2977 RREEQPFGNKPIIESLEQNILIIQGEDYSITCEASGSPYPS-IKWAKVHDFMPENVHISGNVLTI 3040
                                |:.:|::.::.||.:|:|.|: |.|.:::|.:||...|.|:||:.
 Frog   240 --------------------LVREGDELNLKCEVTGNPRPTEIIWTRLNDSLPERAQIQGDVLSF 284

  Fly  3041 YGARFENRGVYSCVAENDHG 3060
            .....::.|.|||...|.||
 Frog   285 PSLSLQDNGTYSCQVSNKHG 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trolNP_001401049.1 LDLa 447..480 CDD:238060
LDLa 532..564 CDD:238060
LDLa 571..606 CDD:238060
LDLa 616..650 CDD:238060
LDLa 704..739 CDD:238060
LDLa 813..847 CDD:238060
LDLa 852..887 CDD:238060
LDLa 902..936 CDD:238060
LDLa 956..990 CDD:238060
LDLa 997..1030 CDD:238060
LDLa 1033..1067 CDD:238060
LDLa 1072..1105 CDD:238060
LDLa 1133..1165 CDD:238060
LDLa 1182..1215 CDD:238060
LDLa 1221..1251 CDD:238060
LDLa 1252..1286 CDD:238060
LDLa 1292..1326 CDD:238060
Ig 1344..1405 CDD:472250
Ig strand B 1355..1359 CDD:409353
Ig strand C 1369..1372 CDD:409353
Ig strand E 1388..1392 CDD:409353
LDLa 1439..1473 CDD:238060
LDLa 1479..1513 CDD:238060
LDLa 1522..1556 CDD:238060
Ig_Perlecan_like 1574..1649 CDD:143220
Ig strand B 1577..1583 CDD:143220
Ig strand C 1590..1595 CDD:143220
Ig strand E 1613..1617 CDD:143220
Ig strand F 1626..1632 CDD:143220
Ig strand G 1641..1647 CDD:143220
Laminin_B 1748..1878 CDD:459652
EGF_Lam 1935..1989 CDD:238012
Laminin_B 2113..2249 CDD:459652
EGF_Lam <2250..2276 CDD:238012
EGF_Lam 2284..2333 CDD:238012
Laminin_EGF <2369..2399 CDD:395007
Laminin_B 2465..2599 CDD:459652
Ig_3 2688..2756 CDD:464046 18/79 (23%)
Ig_3 2791..2861 CDD:464046 18/77 (23%)
Ig_3 2890..2958 CDD:464046 8/67 (12%)
Ig 2987..3071 CDD:472250 23/75 (31%)
Ig strand B 3004..3008 CDD:409353 0/3 (0%)
Ig strand C 3017..3021 CDD:409353 1/4 (25%)
Ig strand E 3036..3040 CDD:409353 2/3 (67%)
Ig strand F 3050..3055 CDD:409353 3/4 (75%)
Ig strand G 3063..3066 CDD:409353
I-set 3089..3162 CDD:400151
Ig strand B 3094..3098 CDD:409353
Ig strand C 3107..3111 CDD:409353
Ig strand E 3128..3132 CDD:409353
Ig strand F 3142..3147 CDD:409353
Ig strand G 3155..3158 CDD:409353
Ig 3165..3253 CDD:472250
Ig strand B 3185..3189 CDD:409353
Ig strand C 3198..3202 CDD:409353
Ig strand E 3219..3223 CDD:409353
Ig strand F 3233..3238 CDD:409353
Ig strand G 3246..3249 CDD:409353
Ig 3298..3355 CDD:472250
Ig strand B 3301..3305 CDD:409353
Ig strand C 3313..3316 CDD:409353
Ig strand E 3333..3336 CDD:409353
IG_like 3381..3457 CDD:214653
Ig strand B 3390..3394 CDD:409353
Ig strand C 3403..3407 CDD:409353
Ig strand F 3437..3442 CDD:409353
IG_like 3475..>3536 CDD:214653
Ig strand B 3480..3484 CDD:409353
Ig strand C 3491..3503 CDD:409353
Ig strand E 3519..3523 CDD:409353
Ig 3613..3675 CDD:472250
Ig strand B 3625..3629 CDD:409353
Ig strand C 3637..3642 CDD:409353
Ig strand E 3658..3662 CDD:409353
IG_like 3706..3772 CDD:214653
Ig strand B 3714..3718 CDD:409353
Ig strand C 3727..3731 CDD:409353
Ig strand E 3746..3750 CDD:409353
Ig strand F 3760..3765 CDD:409353
Ig strand G 3774..3777 CDD:409353
LamG 3794..3939 CDD:238058
EGF 3962..3994 CDD:394967
LamG 4042..4195 CDD:238058
EGF_CA 4254..4286 CDD:238011
LamG 4295..4448 CDD:238058
cadm4XP_002939173.1 IgI_2_Necl-4 128..226 CDD:409468 22/142 (15%)
Ig strand A 128..131 CDD:409468 0/2 (0%)
Ig strand A' 134..138 CDD:409468 1/3 (33%)
Ig strand B 146..156 CDD:409468 4/24 (17%)
Ig strand C 159..168 CDD:409468 3/8 (38%)
Ig strand C' 169..172 CDD:409468 0/2 (0%)
Ig strand D 174..181 CDD:409468 2/6 (33%)
Ig strand E 184..194 CDD:409468 2/9 (22%)
Ig strand F 202..210 CDD:409468 2/7 (29%)
Ig strand G 218..225 CDD:409468 1/36 (3%)
Ig_3 230..301 CDD:464046 24/127 (19%)
4.1m 350..368 CDD:128590
Ig 37..127 CDD:472250 19/93 (20%)
Ig strand B 47..51 CDD:409353 0/3 (0%)
Ig strand C 60..64 CDD:409353 0/3 (0%)
Ig strand E 94..98 CDD:409353 0/3 (0%)
Ig strand F 108..113 CDD:409353 2/4 (50%)
Ig strand G 120..123 CDD:409353 0/2 (0%)
Blue background indicates that the domain is not in the aligned region.

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