DRSC/TRiP Functional Genomics Resources

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Protein Alignment kn and Ebf4

DIOPT Version :9

Sequence 1:NP_001097317.1 Gene:kn / 45318 FlyBaseID:FBgn0001319 Length:689 Species:Drosophila melanogaster
Sequence 2:XP_038961773.1 Gene:Ebf4 / 680751 RGDID:1588215 Length:777 Species:Rattus norvegicus


Alignment Length:692 Identity:373/692 - (53%)
Similarity:430/692 - (62%) Gaps:164/692 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 LYPSAVSGP-----RSAGG-----------------LMFGLPP----------TAAVDMNQ---- 167
            |.|.|.:||     |.:||                 |:..|||          |||...::    
  Rat    41 LPPGAAAGPGRRGTRGSGGGCVCWPSAGPAFPRDARLLLLLPPRPPPSPPPTSTAAASPSRMDAL 105

  Fly   168 PRGPMTSLKEEP-----LGS--RWAMQP--VVD-----QSNLGIGRAHFEKQPPSNLRKSNFFHF 218
            |||.: .|||||     |||  .| ||.  ::|     ||.:|:.||||||||||||||||||||
  Rat   106 PRGGL-HLKEEPLLPSSLGSVRSW-MQSAGILDSSTAAQSGVGLARAHFEKQPPSNLRKSNFFHF 168

  Fly   219 VIALYDRAGQPIEIERTAFIGFIEKDSESDATKTNNGIQYRLQLLYANGARQEQDIFVRLIDSVT 283
            |:|:|||.|||:|:||||||.|:|||.|....||||||.|||:|:|.||.|.|||::||||||::
  Rat   169 VLAMYDRQGQPVEVERTAFIDFVEKDREPGTEKTNNGIHYRLRLVYNNGLRTEQDLYVRLIDSMS 233

  Fly   284 KQAIIYEGQDKNPEMCRVLLTHEVMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLK 348
            |||||||||||||||||||||||:|||||||:|||||||||||||||||||||||||||||||||
  Rat   234 KQAIIYEGQDKNPEMCRVLLTHEIMCSRCCDRKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLK 298

  Fly   349 NAGNPRDMRRFQVVISTQVAVDGPLLAISDNMFVHNNSKHGRRAKRLDTTEGTGNTSLSISGHP- 412
            ||||||||||||||:||.|:|||.:||:||||||||||||||||:|||.:|  |..|....|.| 
  Rat   299 NAGNPRDMRRFQVVVSTTVSVDGHVLAVSDNMFVHNNSKHGRRARRLDPSE--GQDSQPSPGQPQ 361

  Fly   413 -LAPDSTYDGLYPPLPVATPCIKAISPSEGWTTGGATVIIVGDNFFDGLQVVFGTMLVWSELITS 476
             |...|....:...||.||||||||||.||||||||||||:|||||||||||||.:|:||||||.
  Rat   362 SLPWCSPLTWVLSYLPAATPCIKAISPGEGWTTGGATVIIIGDNFFDGLQVVFGNVLLWSELITP 426

  Fly   477 HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGSPGRFVYVSALNEPTIDYGFQRLQKLIPRHPGDPE 541
            ||:|||||||||||||||||||||||||||:|||||| :||||||||||||||||:|||||||||
  Rat   427 HALRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVY-TALNEPTIDYGFQRLQKVIPRHPGDPE 490

  Fly   542 KLQKEIILKRAADL----------------------VEALYSMPRSPG------------GSTGF 572
            :|.||::|||||||                      .|||||.||:|.            ...|.
  Rat   491 RLPKEVLLKRAADLAEALYGVPNSNQELLLKRAADVAEALYSAPRAPAPLGPLAPSHPHPAVVGI 555

  Fly   573 NSYAGQLAVSVQDGSGQWTEDDYQRAQSSSVSPR-----GGYCSSASTPHSSG-GSYGA------ 625
            |:::..||::|.|.:   .|..|.|: ..|.|||     |...||..:...:| |||||      
  Rat   556 NAFSSPLAIAVGDAT---PEPGYARS-CGSASPRFAPSPGSQQSSYGSGLGAGLGSYGAPGVTGL 616

  Fly   626 ------------TAA------------------------------------SAAVAATANGYAPA 642
                        ||.                                    |..|:.||...|||
  Rat   617 GVPGSPSFLNGSTATSPFASPHIPGRPEPAAWSTGTHCPRDTPTLLLTLVLSPVVSPTAFPAAPA 681

  Fly   643 PNM---GTLSSSPGSVFNSTSRVSSLSFNPFALPTCNTQGYS 681
            |:.   |.:.|||     ..:..||:|. |.|.||.:...:|
  Rat   682 PSSPRPGVMPSSP-----PLAAASSMSL-PAAAPTTSVFSFS 717

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
knNP_001097317.1 COE_DBD 184..395 CDD:212156 171/217 (79%)
IPT_COE 431..515 CDD:238580 75/83 (90%)
COE1_HLH 517..560 CDD:293032 36/64 (56%)
Ebf4XP_038961773.1 COE1_DBD 119..345 CDD:406750 174/226 (77%)
IPT_COE 381..465 CDD:238580 75/84 (89%)
COE1_HLH 466..509 CDD:406751 34/42 (81%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353123
Domainoid 1 1.000 374 1.000 Domainoid score I843
eggNOG 1 0.900 - - E1_KOG3836
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 648 1.000 Inparanoid score I768
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D352969at33208
OrthoFinder 1 1.000 - - FOG0000764
OrthoInspector 1 1.000 - - otm45447
orthoMCL 1 0.900 - - OOG6_102533
Panther 1 1.100 - - O PTHR10747
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X577
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.800

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