DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kn and ebf3a

DIOPT Version :9

Sequence 1:NP_001097317.1 Gene:kn / 45318 FlyBaseID:FBgn0001319 Length:689 Species:Drosophila melanogaster
Sequence 2:XP_009305176.1 Gene:ebf3a / 567751 ZFINID:ZDB-GENE-070112-292 Length:597 Species:Danio rerio


Alignment Length:584 Identity:366/584 - (62%)
Similarity:414/584 - (70%) Gaps:96/584 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 MFGLPPTAAVDMNQPRGPMTSLKEEPLGSRWAMQP---------VVD-----QSNLGIGRAHFEK 204
            |||      :..|.|||. |::|||||||  .|.|         |||     ||.:|:.|||:||
Zfish     1 MFG------IQENIPRGG-TTMKEEPLGS--GMNPVRSWMHTAGVVDAHTAAQSGVGLARAHYEK 56

  Fly   205 QPPSNLRKSNFFHFVIALYDRAGQPIEIERTAFIGFIEKDSESDATKTNNGIQYRLQLLYANGAR 269
            |||||||||||||||:|||||.|||:|||||||:.|:||:.|.::.||||||.|:|||||:||.|
Zfish    57 QPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVDFVEKEKEPNSEKTNNGIHYKLQLLYSNGVR 121

  Fly   270 QEQDIFVRLIDSVTKQAIIYEGQDKNPEMCRVLLTHEVMCSRCCDKKSCGNRNETPSDPVIIDRF 334
            .|||::||||||:||||||||||||||||||||||||:|||||||||||||||||||||||||||
Zfish   122 TEQDLYVRLIDSMTKQAIIYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRF 186

  Fly   335 FLKFFLKCNQNCLKNAGNPRDMRRFQVVISTQVAVDGPLLAISDNMFVHNNSKHGRRAKRLDTTE 399
            ||||||||||||||||||||||||||||:||.|.|||.:||:||||||||||||||||:|||.:|
Zfish   187 FLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSE 251

  Fly   400 GTGNTSLSISGHPLAPDSTYDGLYPPLPVATPCIKAISPSEGWTTGGATVIIVGDNFFDGLQVVF 464
            ||....|.                   ..|||||||||||||||||||||||:||||||||||||
Zfish   252 GTATPYLE-------------------NAATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVVF 297

  Fly   465 GTMLVWSELITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGSPGRFVYVSALNEPTIDYGFQRL 529
            |||||||||||.||||||||||||||||||||||||||||||:|||||| :||||||||||||||
Zfish   298 GTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVY-TALNEPTIDYGFQRL 361

  Fly   530 QKLIPRHPGDPEKLQKEIILKRAADLVEALYSMPR------------------------------ 564
            ||:|||||||||:|.||::||||||||||||.||.                              
Zfish   362 QKVIPRHPGDPERLPKEVLLKRAADLVEALYGMPHNNQEIILKRAADIAEALYSVPRNHNQIPSL 426

  Fly   565 ----SPGGSTGFNSYAGQLAVSVQDGSGQWTEDDYQRAQSSSVSPRGGYCSSASTPHSSGGSYGA 625
                |.||..|.||::.||||:|.:.|    :..|.| .:|||||| ||..| |||..|  :|. 
Zfish   427 ANTASHGGMMGVNSFSSQLAVNVSETS----QVGYSR-NTSSVSPR-GYVPS-STPQQS--NYN- 481

  Fly   626 TAASAAVAATANGYAPA--PNMGTLSSSPGSVFNSTSRVSSLSFNPFALPTCNTQGYSTQLVTS 687
                 .|:.:.|||...  ||:| :.|||| ..|.:|..|........:|:..|...|:..::|
Zfish   482 -----TVSNSMNGYGNTGMPNLG-VPSSPG-FLNGSSANSPYGSKYQVVPSSPTMAASSVSLSS 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
knNP_001097317.1 COE_DBD 184..395 CDD:212156 174/224 (78%)
IPT_COE 431..515 CDD:238580 80/83 (96%)
COE1_HLH 517..560 CDD:293032 37/42 (88%)
ebf3aXP_009305176.1 COE1_DBD 21..247 CDD:293031 176/227 (78%)
IPT_COE 264..348 CDD:238580 80/84 (95%)
COE1_HLH 349..392 CDD:293032 37/42 (88%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170595169
Domainoid 1 1.000 374 1.000 Domainoid score I834
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H56472
Inparanoid 1 1.050 648 1.000 Inparanoid score I781
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D352969at33208
OrthoFinder 1 1.000 - - FOG0000764
OrthoInspector 1 1.000 - - otm25853
orthoMCL 1 0.900 - - OOG6_102533
Panther 1 1.100 - - O PTHR10747
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2885
SonicParanoid 1 1.000 - - X577
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1312.930

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