DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kn and ebf2

DIOPT Version :9

Sequence 1:NP_001097317.1 Gene:kn / 45318 FlyBaseID:FBgn0001319 Length:689 Species:Drosophila melanogaster
Sequence 2:XP_012814224.1 Gene:ebf2 / 394808 XenbaseID:XB-GENE-971136 Length:602 Species:Xenopus tropicalis


Alignment Length:585 Identity:352/585 - (60%)
Similarity:399/585 - (68%) Gaps:105/585 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 MFGLPPTAAVDMNQPRGPMTSLKEEPLGSRWAMQP---------VVD-----QSNLGIGRAHFEK 204
            |||:..|.|       ...|:|:::.||.  .|.|         |||     ||.:.:.||||||
 Frog     1 MFGVQDTLA-------RSGTALRDKALGV--GMDPVRSWVRNVGVVDAKVAAQSGVAVSRAHFEK 56

  Fly   205 QPPSNLRKSNFFHFVIALYDRAGQPIEIERTAFIGFIEKDSESDATKTNNGIQYRLQLLYANGAR 269
            |||||||||||||||:|||||.|||||||||||:.|:|.:.|....|||||..|:|||||:||.|
 Frog    57 QPPSNLRKSNFFHFVLALYDRQGQPIEIERTAFVDFVENEKELSTEKTNNGTHYKLQLLYSNGVR 121

  Fly   270 QEQDIFVRLIDSVTKQAIIYEGQDKNPEMCRVLLTHEVMCSRCCDKKSCGNRNETPSDPVIIDRF 334
            .|||::||||||||||.|.||||:||||||||||||||||||||:||||||||||||||||||||
 Frog   122 TEQDLYVRLIDSVTKQPIAYEGQNKNPEMCRVLLTHEVMCSRCCEKKSCGNRNETPSDPVIIDRF 186

  Fly   335 FLKFFLKCNQNCLKNAGNPRDMRRFQVVISTQVAVDGPLLAISDNMFVHNNSKHGRRAKRLDTTE 399
            ||||||||||||||.|||||||||||||:||.|.|||.:||:||||||||||||||||:|||.:|
 Frog   187 FLKFFLKCNQNCLKTAGNPRDMRRFQVVLSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSE 251

  Fly   400 GTGNTSLSISGHPLAPDSTYDGLYPPLPVATPCIKAISPSEGWTTGGATVIIVGDNFFDGLQVVF 464
                                         |||||||||||||||||||.|||:||||||||||||
 Frog   252 -----------------------------ATPCIKAISPSEGWTTGGAMVIIIGDNFFDGLQVVF 287

  Fly   465 GTMLVWSELITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGSPGRFVYVSALNEPTIDYGFQRL 529
            |||||||||||.||||||||||||||||||||||||||||||:||||:| :||||||||||||||
 Frog   288 GTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIY-TALNEPTIDYGFQRL 351

  Fly   530 QKLIPRHPGDPEKLQKEIILKRAADLV----------------------EALYSMPR-------- 564
            ||:|||||||||:|.||::||||||||                      |||||:||        
 Frog   352 QKVIPRHPGDPERLAKEMLLKRAADLVEALYGTPHNNQDIILKRAADIAEALYSVPRNHNQIPAL 416

  Fly   565 --SP--GGSTGFNSYAGQLAVSVQDGSGQWTEDDYQRAQSSSVSPRGGYCSSASTPHSSGGSYGA 625
              ||  .|..|.|||.|||.||:.:  .|.....|.| .:||:||||  .||:|||..|  :|..
 Frog   417 SSSPVHSGMMGINSYGGQLGVSISE--SQANNQGYIR-NTSSISPRG--YSSSSTPQQS--NYST 474

  Fly   626 TAASAAVAATANGYA--PAPNMGTLSSSPGSVFNSTSRVSSLSFNPFALPTCNTQGYSTQLVTST 688
            .:.|      .|||:  |..|:| :..|||.: |.:...|.....| :.|...:.|.|:.|..|:
 Frog   475 PSNS------MNGYSNVPMSNLG-VPGSPGFI-NGSPTTSPYGIMP-SSPPVGSSGSSSILPFSS 530

  Fly   689  688
             Frog   531  530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
knNP_001097317.1 COE_DBD 184..395 CDD:212156 170/224 (76%)
IPT_COE 431..515 CDD:238580 78/83 (94%)
COE1_HLH 517..560 CDD:293032 37/64 (58%)
ebf2XP_012814224.1 COE1_DBD 21..247 CDD:293031 171/227 (75%)
IPT_COE 254..338 CDD:238580 78/84 (93%)
COE1_HLH 339..382 CDD:293032 35/42 (83%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 373 1.000 Domainoid score I878
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 655 1.000 Inparanoid score I773
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D352969at33208
OrthoFinder 1 1.000 - - FOG0000764
OrthoInspector 1 1.000 - - otm48525
Panther 1 1.100 - - O PTHR10747
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X577
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.070

Return to query results.
Submit another query.