DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kn and ebf4

DIOPT Version :9

Sequence 1:NP_001097317.1 Gene:kn / 45318 FlyBaseID:FBgn0001319 Length:689 Species:Drosophila melanogaster
Sequence 2:XP_004912820.1 Gene:ebf4 / 100492234 XenbaseID:XB-GENE-6030626 Length:604 Species:Xenopus tropicalis


Alignment Length:607 Identity:363/607 - (59%)
Similarity:414/607 - (68%) Gaps:115/607 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 MFGLPPTAAVDMNQPRGPMTSLKEEPLGS-----RWAMQ--PVVD-----QSNLGIGRAHFEKQP 206
            |||:..:.     |..|  ||:|||||..     |..||  .|:|     ||.:|:.||||||||
 Frog     1 MFGIQESI-----QRSG--TSMKEEPLSGGMNAVRTWMQGAGVLDANTAAQSGVGLARAHFEKQP 58

  Fly   207 PSNLRKSNFFHFVIALYDRAGQPIEIERTAFIGFIEKDSESDATKTNNGIQYRLQLLYANGARQE 271
            |||||||||||||:|||||.|||:|||||||:||:|||.|:.:.||||||.|||||||:||.|.|
 Frog    59 PSNLRKSNFFHFVLALYDRQGQPVEIERTAFVGFVEKDKETSSEKTNNGIHYRLQLLYSNGIRTE 123

  Fly   272 QDIFVRLIDSVTKQAIIYEGQDKNPEMCRVLLTHEVMCSRCCDKKSCGNRNETPSDPVIIDRFFL 336
            ||.:||||||:|||.|:||||||||||||||||||:|||||||||||||||||||||||||||||
 Frog   124 QDFYVRLIDSMTKQPIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFL 188

  Fly   337 KFFLKCNQNCLKNAGNPRDMRRFQVVISTQVAVDGPLLAISDNMFVHNNSKHGRRAKRLDTTEGT 401
            ||||||||||||||||||||||||||:||.:.|||.:||:||||||||||||||||:|||.::||
 Frog   189 KFFLKCNQNCLKNAGNPRDMRRFQVVVSTTINVDGHVLAVSDNMFVHNNSKHGRRARRLDPSDGT 253

  Fly   402 GNTSLSISGHPLAPDSTYDGLYPPLPVATPCIKAISPSEGWTTGGATVIIVGDNFFDGLQVVFGT 466
            .    |...|                .||||||||||||||||||||||::||||||||||:|||
 Frog   254 P----SYLEH----------------AATPCIKAISPSEGWTTGGATVIVIGDNFFDGLQVIFGT 298

  Fly   467 MLVWSELITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGSPGRFVYVSALNEPTIDYGFQRLQK 531
            |||||||||.||||||||||||||||||||||||||||||:||||:| :||||||||||||||||
 Frog   299 MLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFIY-TALNEPTIDYGFQRLQK 362

  Fly   532 LIPRHPGDPEKLQKEIILKRAADLVEALYSMPRS--------------------------PG--- 567
            :|||||||||:|.||:|||||||||||||.||.:                          |.   
 Frog   363 VIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQEIILKRAADIAEALYSVPRNHSQLPALTN 427

  Fly   568 -----GSTGFNSYAGQLAVSVQDGSGQWTEDDYQRAQSSSVSPRGGYCSSASTPH--------SS 619
                 |..|.||::|||||:|.:.| |.|...:.| .:|||||. .|..| :||.        :|
 Frog   428 SSVHPGMMGVNSFSGQLAVNVSEPS-QVTNQGFSR-NTSSVSPH-SYAPS-TTPQQTNYSSVTTS 488

  Fly   620 GGSYGATAAS--AAVAATANG------YAPAPNMGTLSSSPGSVFNSTSRVSSLSFNPFAL---- 672
            ...||.||.|  |...:..||      ||..|:..|::||.....|.:|.....||:|..:    
 Frog   489 MNGYGNTAMSNLAGSPSFLNGSAANSPYAIVPSSPTMASSTSLPSNCSSSSGIFSFSPANMVSAV 553

  Fly   673 -----------------PTCNT 677
                             |||::
 Frog   554 KQKSAFAPVVRPQASPPPTCSS 575

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
knNP_001097317.1 COE_DBD 184..395 CDD:212156 174/217 (80%)
IPT_COE 431..515 CDD:238580 77/83 (93%)
COE1_HLH 517..560 CDD:293032 38/42 (90%)
ebf4XP_004912820.1 COE1_DBD 23..247 CDD:293031 175/223 (78%)
IPT_COE 263..347 CDD:238580 77/84 (92%)
COE1_HLH 348..391 CDD:293032 38/42 (90%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 373 1.000 Domainoid score I878
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 655 1.000 Inparanoid score I773
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D352969at33208
OrthoFinder 1 1.000 - - FOG0000764
OrthoInspector 1 1.000 - - otm48525
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X577
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.060

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