DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dr and Msx1

DIOPT Version :9

Sequence 1:NP_477324.1 Gene:Dr / 45285 FlyBaseID:FBgn0000492 Length:515 Species:Drosophila melanogaster
Sequence 2:NP_112321.2 Gene:Msx1 / 81710 RGDID:620929 Length:303 Species:Rattus norvegicus


Alignment Length:322 Identity:121/322 - (37%)
Similarity:143/322 - (44%) Gaps:107/322 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   236 SPPASTSSTP---------SSTPLGSALGSQGNVASTPAKNERHSPLGSHTDSE----------L 281
            :|.|:.:|.|         .:.|.|...|.....|:..|     :.:|  ||.|          |
  Rat     2 APAAAMTSLPLGVKVEDSAFAKPAGGGAGQAPGAAAATA-----TAMG--TDEEGAKPKVPASLL 59

  Fly   282 EYDEEMLQDHEADHDEEEDSIVDIEDMNADDSPRSTPDGLDGSGKSLESPH-GPPPGSHMQSTIL 345
            .:..|.|.   |||.:.          .|.:|.....:|...:|.|::  | |..|||       
  Rat    60 PFSVEALM---ADHRKP----------GAKESVLVASEGAQAAGGSVQ--HLGTRPGS------- 102

  Fly   346 SPAALASGHVPIRPTPFSALAAAAVAWTGMGGGV--------------------PWPGTRQMPPF 390
                |.:...|..|.|....:.         ||:                    ||   .|.|.|
  Rat   103 ----LGAPDAPSSPGPLGHFSV---------GGLLKLPEDALVKAESPEKLDRTPW---MQSPRF 151

  Fly   391 GPPGMFPGAGFGGDANEPPRIKCNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 455
            .||   |....     .||  .|.|||||.||||||||||.|||:||:|||:|||||||||||||
  Rat   152 SPP---PARRL-----SPP--ACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFS 206

  Fly   456 SSLRLTETQVKIWFQNRRAKAKRLQEAEIEKIKMAA------------LGRGAPGAQWAMAG 505
            |||.||||||||||||||||||||||||:||:||||            ...|.|.|..|.||
  Rat   207 SSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGGPAAVAAAAG 268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DrNP_477324.1 Homeobox 424..477 CDD:278475 47/52 (90%)
Msx1NP_112321.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351156
Domainoid 1 1.000 107 1.000 Domainoid score I6381
eggNOG 1 0.900 - - E1_KOG0850
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000776
OrthoInspector 1 1.000 - - otm45164
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24338
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X657
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.800

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