DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dr and Nkx6-1

DIOPT Version :9

Sequence 1:NP_477324.1 Gene:Dr / 45285 FlyBaseID:FBgn0000492 Length:515 Species:Drosophila melanogaster
Sequence 2:NP_113925.1 Gene:Nkx6-1 / 65193 RGDID:69318 Length:365 Species:Rattus norvegicus


Alignment Length:401 Identity:108/401 - (26%)
Similarity:162/401 - (40%) Gaps:111/401 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 LQLAAVHPPAHHLHKTTSRLSNFSVASLLADTRPRTPPNQAADGPQNLTSSAATSPISQASSTPP 176
            |.:.|:..|    .::...||:..:|:|.:....:||...||..|  |.:...:|..|.:||:.|
  Rat     2 LAVGAMEGP----RQSAFLLSSPPLAALHSMAEMKTPLYPAAYPP--LPTGPPSSSSSSSSSSSP 60

  Fly   177 PPPASAAAQVPANTFHPAAVAHHAHLLQ--AAHAAAAAHAQHQAMAAQLRQQQQQADARANSPPA 239
            .||..               ||:...|:  ||...::..:..|.::|..........:|.:.|.|
  Rat    61 SPPLG---------------AHNPGGLKPPAAGGLSSLGSPPQQLSAATPHGINDILSRPSMPVA 110

  Fly   240 STSSTPSSTPLGSALGSQGNVASTPAKNERHSPLGSHTDSELEYDEEMLQDHEADHDEEEDSIVD 304
            |.::.||::|.||:..|..:.::|.|                                   |...
  Rat   111 SGAALPSASPSGSSSSSSSSASATSA-----------------------------------SAAA 140

  Fly   305 IEDMNADDSPRSTPDG-LDGSGK-SLESPHGPPPGSHMQSTILSPAALASGHVPIRPTPFSALAA 367
            .....|..:..|:|.| |.|..: |..||..||||.:     .||:|.|...|...|.|.:.|. 
  Rat   141 AAAAAAAAAAASSPAGLLAGLPRFSSLSPPPPPPGLY-----FSPSAAAVAAVGRYPKPLAELP- 199

  Fly   368 AAVAWTGMGGGVP--WPGTRQMPPFGPPGMFPGAGFGGDANEPPRIKCN-------LRKHKPNRK 423
                     |..|  |||..|.||:            .||    |:.|.       |.|....:.
  Rat   200 ---------GRTPIFWPGVMQSPPW------------RDA----RLACTPHQGSILLDKDGKRKH 239

  Fly   424 PRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLRLTETQVKIWFQNRRAK-----------AK 477
            .|..|:.||:.:|||.|.:.:||:..|||..:.||.:||:|||:||||||.|           ||
  Rat   240 TRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKHAAEMATAK 304

  Fly   478 RLQEAEIEKIK 488
            :.|::|.|::|
  Rat   305 KKQDSETERLK 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DrNP_477324.1 Homeobox 424..477 CDD:278475 27/63 (43%)
Nkx6-1NP_113925.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 35..136 29/117 (25%)
Repressor domain. /evidence=ECO:0000250 102..269 60/232 (26%)
Homeobox 240..294 CDD:395001 27/53 (51%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 295..365 6/21 (29%)
Involved in DNA-binding. /evidence=ECO:0000250 307..365 4/9 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0850
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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