DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dr and msx3

DIOPT Version :9

Sequence 1:NP_477324.1 Gene:Dr / 45285 FlyBaseID:FBgn0000492 Length:515 Species:Drosophila melanogaster
Sequence 2:NP_571347.2 Gene:msx3 / 30526 ZFINID:ZDB-GENE-980526-306 Length:273 Species:Danio rerio


Alignment Length:269 Identity:105/269 - (39%)
Similarity:135/269 - (50%) Gaps:43/269 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   271 SPLGSHTDSELEYDEE-MLQDHEADHDEEEDSIVDIEDMNADDSPRSTPDGLDGSGKSL----ES 330
            :||.|..:||....:| .||:.::         .|.||..::|  ::...|..|...||    ||
Zfish     2 APLSSMMNSEGPLSQEGKLQERKS---------ADKEDAQSND--KAAVKGCKGKALSLPFSVES 55

  Fly   331 PHGPPPGSH-----MQSTILSPAALASGHVPIRPTPFSALAAAAVAWTGMGGGVPWPGTRQMPPF 390
            .......|.     .::.|:||.:.|...:.:.|....|.....|...............::...
Zfish    56 LISDRTSSRTLYTSSEAGIISPTSGADERLKLSPMALYADRKIPVESVSNLSDCKRGDMEELSDK 120

  Fly   391 GPPGMFPGAGFGGDANEPPRIK----CNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAER 451
            |..|.|....:    ..|||..    |.|||||.||||||||||.|||:||:|||:|||||||||
Zfish   121 GQSGWFQTTSY----TSPPRHSSPPPCTLRKHKNNRKPRTPFTTSQLLALERKFRQKQYLSIAER 181

  Fly   452 AEFSSSLRLTETQVKIWFQNRRAKAKRLQEAEIEKIKMAA------------LGR--GAPGAQWA 502
            ||||:||.||||||||||||||||||||||||:||:|:|.            ||.  |:|.....
Zfish   182 AEFSNSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKLATKPLLPAFAFPFPLGTHVGSPPLYGP 246

  Fly   503 MAGYFHPSL 511
            .:.:..|:|
Zfish   247 SSSFPRPAL 255

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DrNP_477324.1 Homeobox 424..477 CDD:278475 46/52 (88%)
msx3NP_571347.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 114..159 19/48 (40%)
Homeobox 154..207 CDD:278475 46/52 (88%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592939
Domainoid 1 1.000 106 1.000 Domainoid score I6491
eggNOG 1 0.900 - - E1_KOG0850
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000776
OrthoInspector 1 1.000 - - otm25138
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR24338
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2894
SonicParanoid 1 1.000 - - X657
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1110.830

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