Protein Alignment Dr and Cdx4

DIOPT Version :10

• Sequence 1: NP_477324.1
• Gene: Dr / 45285
• FlyBaseID: FBgn0000492
• Length: 515
• Species: Drosophila melanogaster
• Sequence 2: NP_001100412.1
• Gene: Cdx4 / 302400
• RGDID: 1561529
• Length: 288
• Species: Rattus norvegicus
• Alignment Length: 259
• Identity: 70/259 - (27%)
• Similarity: 104/259 - (40%)
• Gaps: 59/259 - (22%)

  Fly   251 GSALG---SQGNVASTPAKNERHSPLGSHTDSELEYDEEMLQDHEADHDEEEDSIVDIEDMNADD 312
            ||..|   |.|:.:..||.|...:|:         |...|...|.::.|....|      :.|..
  Rat    24 GSTAGVGTSGGSGSPLPASNFTAAPV---------YPHYMGYPHMSNMDPHGPS------LGAWS 73

  Fly   313 SPRSTP--DGLDGSGKSLESPHGPPPGSHMQSTILSPAALASGHVPIRPTPFSALAAAAVAWTGM 375
            ||.|.|  |.....|.|  |..|..|.:.|.|:  |||..:..:..:.||       ........
  Rat    74 SPYSPPREDWSTYPGPS--STMGTVPMNDMTSS--SPAFGSPDYSTLGPT-------GGAGGASN 127

  Fly   376 GGGVPWPGTRQMPPFGPPGMFPGAGFGGDANEPPRIKCNLRKHKP----------------NRKP 424
            ||.:|...:..:...       .:|..|.|..|.|     .:|.|                ..|.
  Rat   128 GGSLPDAASESLVSI-------DSGTSGGATSPSR-----SRHSPYAWMRKTVQVTGKTRTKEKY 180

  Fly   425 RTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLRLTETQVKIWFQNRRAKAKRLQEAEIEKIK 488
            |..:|..|.|.|||:|...:|::|..::|.:.:|.|:|.||||||||||||.:::.:.:|.:.:
  Rat   181 RVVYTDHQRLELEKEFHCNRYITIRRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFE 244

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Dr	NP_477324.1	Homeodomain	422..478	CDD:459649	27/55 (49%)
Cdx4	NP_001100412.1	Caudal_act	13..174	CDD:461413	42/187 (22%)
		Homeodomain	179..234	CDD:459649	27/54 (50%)