DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dr and Cdx1

DIOPT Version :9

Sequence 1:NP_477324.1 Gene:Dr / 45285 FlyBaseID:FBgn0000492 Length:515 Species:Drosophila melanogaster
Sequence 2:NP_034010.3 Gene:Cdx1 / 12590 MGIID:88360 Length:268 Species:Mus musculus


Alignment Length:211 Identity:65/211 - (30%)
Similarity:87/211 - (41%) Gaps:47/211 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   312 DSP----RSTPDGLDGSGKSLESPHGPPPGSHMQSTILSPAALASGHVPIRPTPFSALAAAAVA- 371
            |||    .:.|..| |.|....:|.||.|.....     |......||...|.|....||...| 
Mouse    10 DSPVYPGPARPSSL-GLGPPTYAPPGPAPAPPQY-----PDFAGYTHVEPAPAPPPTWAAPFPAP 68

  Fly   372 ---WTGMGGGVPWPGTRQMPP--FGPPGMF------PGAGFG---------GDANEP--PR---- 410
               |....|..|........|  ||||..|      ||.|.|         |..:.|  ||    
Mouse    69 KDDWAAAYGPGPTASAASPAPLAFGPPPDFSPVPAPPGPGPGILAQSLGAPGAPSSPGAPRRTPY 133

  Fly   411 --IKCNLR--------KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLRLTETQV 465
              ::.::.        |.:...|.|..:|..|.|.|||:|...:|::|..::|.:::|.|||.||
Mouse   134 EWMRRSVAAAGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQV 198

  Fly   466 KIWFQNRRAKAKRLQE 481
            ||||||||||.:::.:
Mouse   199 KIWFQNRRAKERKVNK 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DrNP_477324.1 Homeobox 424..477 CDD:278475 27/52 (52%)
Cdx1NP_034010.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..152 37/147 (25%)
Caudal_act 13..138 CDD:282574 33/130 (25%)
Interaction with DNA. /evidence=ECO:0000250|UniProtKB:P47902 157..178 8/20 (40%)
Homeobox 158..210 CDD:278475 27/51 (53%)
Interaction with 5-mCpG DNA. /evidence=ECO:0000250|UniProtKB:P47902 196..207 9/10 (90%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 209..268 0/6 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0850
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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