DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dr and cdx1b

DIOPT Version :9

Sequence 1:NP_477324.1 Gene:Dr / 45285 FlyBaseID:FBgn0000492 Length:515 Species:Drosophila melanogaster
Sequence 2:NP_001092232.1 Gene:cdx1b / 100004956 ZFINID:ZDB-GENE-070615-29 Length:255 Species:Danio rerio


Alignment Length:183 Identity:51/183 - (27%)
Similarity:83/183 - (45%) Gaps:41/183 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   330 SPHGPPPGSHMQSTILSPAALASGHVPIRPTPFSALAAAAVAWTGMGGGVPW--PGTRQMPPFG- 391
            :|:||..|....||         |.:...|..||::....:..:.:...|..  |..::..|:. 
Zfish    74 TPYGPGSGVSSSST---------GQLGFSPPEFSSVQTPGLLQSSINSSVGQLSPNAQRRNPYDW 129

  Fly   392 -----PPGMFPGAGFGGDANEPPRIKCNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAER 451
                 ||     |..||             |.:...|.|..:|..|.|.|||:|...:|::|..:
Zfish   130 MRRSVPP-----ASSGG-------------KTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRK 176

  Fly   452 AEFSSSLRLTETQVKIWFQNRRAKAKRLQEAEIEKIKMAAL------GRGAPG 498
            ||.:::|.|:|.||||||||||||.:::.:.::::.:.|:.      |...||
Zfish   177 AELATALSLSERQVKIWFQNRRAKERKINKKKMQQPQPASTTTPTPPGSALPG 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DrNP_477324.1 Homeobox 424..477 CDD:278475 27/52 (52%)
cdx1bNP_001092232.1 Caudal_act 13..132 CDD:282574 13/66 (20%)
Homeobox 150..202 CDD:278475 27/51 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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