DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cv-2 and Chrdl1

DIOPT Version :10

Sequence 1:NP_524809.2 Gene:cv-2 / 45280 FlyBaseID:FBgn0000395 Length:751 Species:Drosophila melanogaster
Sequence 2:XP_006529064.1 Gene:Chrdl1 / 83453 MGIID:1933172 Length:450 Species:Mus musculus


Alignment Length:411 Identity:81/411 - (19%)
Similarity:116/411 - (28%) Gaps:183/411 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 CSFRGMSYESGSEWNDPEDPCKTYKCVATVVTETIQKCYSQCDNNQLQPPRPGECCPTCQGCKIN 187
            |.|:...|..|.:|:...:|.....||..:                               |..|
Mouse    32 CVFQDKKYRVGEKWHPYLEPYGLVYCVNCI-------------------------------CSEN 65

  Fly   188 GQTVAEGHEVDASIDDRCLVCQCRGTQLTCSKKTCPVLPCPMSKQIKRPDECCPRCPQNHSFLPV 252
            |..:                         ||:..||.|.|.....|  |..||||||:: |..||
Mouse    66 GNVL-------------------------CSRVRCPSLHCLSPVHI--PHLCCPRCPED-SLPPV 102

  Fly   253 PGK-----CLFNKSVYPEKTQFM---------PDRCTNCTCLNGTSVCQRPTCPILECAPEFQEP 303
            ..|     |.:|.:.|.....|:         |::|:.|:|..|...|...|||.|.||.....|
Mouse   103 NNKVTSKSCEYNGTTYQHGELFIAEGLFQNRQPNQCSQCSCSEGNVYCGLKTCPKLTCAFPVSVP 167

  Fly   304 DGCCPRC-------------------AVAEVRSE------------------------------- 318
            |.||..|                   |..|.|..                               
Mouse   168 DSCCRVCRGDAELSWEHADGDIFRQPANREARHSYLRSPYDPPPNRQAGGLPRFPGSRSHRGAVI 232

  Fly   319 -------------------------CSLDGIVYQNNETW-------DMGPCRSCRCNGGTIRCAQ 351
                                     |..:|..|.:.|:|       .:..|..|.||.....|.:
Mouse   233 DSQQASGTIVQIVINNKHKHGQGKVCVSNGKTYSHGESWHPNLRAFGIVECVLCTCNVTKQECKK 297

  Fly   352 MRCP-AVKCRANEELKQPPGECCQRCVETAGTCTVFGDPHFRTFDGKFFSFQGSCKYLLASDCMG 415
            :.|| ...|:..:::   .|:||:.|.|         :|..:.||.|            .|.|..
Mouse   298 IHCPNRYPCKYPQKI---DGKCCKVCPE---------EPPSQNFDSK------------GSFCGE 338

  Fly   416 KTFHIR---LTNEGRGTRRAS 433
            :|..:.   ...:|..||:.:
Mouse   339 ETMPVYESVFMEDGETTRKVA 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cv-2NP_524809.2 VWC 184..243 CDD:214564 14/58 (24%)
VWC 256..310 CDD:278520 20/62 (32%)
VWC 319..376 CDD:214564 16/64 (25%)
VWD 371..536 CDD:214566 14/66 (21%)
C8 580..646 CDD:462584
Chrdl1XP_006529064.1 VWC 32..94 CDD:450195 22/119 (18%)
VWC 111..174 CDD:450195 20/62 (32%)
VWC 258..320 CDD:450195 16/64 (25%)
CHRDL_1_2_C 331..450 CDD:437380 7/41 (17%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.