DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cv-2 and bmper

DIOPT Version :9

Sequence 1:NP_524809.2 Gene:cv-2 / 45280 FlyBaseID:FBgn0000395 Length:751 Species:Drosophila melanogaster
Sequence 2:XP_012820269.2 Gene:bmper / 733449 XenbaseID:XB-GENE-480927 Length:741 Species:Xenopus tropicalis


Alignment Length:684 Identity:235/684 - (34%)
Similarity:328/684 - (47%) Gaps:97/684 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 CQSSGQWKFPAQQPRKSLASRRRHTGFRPST---QLLILIAVLLALLQGRTVDAGAGDSLSGVRQ 64
            |.|:|:...|.......:          |.|   .:|:|..|:...|        |...|:|...
 Frog    58 CPSTGKCLLPMSLTFSEI----------PITFIGWILVLSTVVRMSL--------ASSFLTGSIA 104

  Fly    65 SCSNEGEEVQ---LKNQPQIFTCFKCECQNGFVNC-RDTCPPVN-DCYILDKSNGTCCRRCKGCS 124
            .|.||||.:|   :.:.|    |..|.|.|..|.| |:.||.:: ||.::.|..|.||.|||||:
 Frog   105 KCENEGEALQIPFITDNP----CISCVCLNKEVTCKREKCPVLSKDCALVVKQRGACCERCKGCN 165

  Fly   125 FRGMSYESGSEWNDPEDPCKTYKCVATVVTETIQKCYSQCDNNQLQPPRPGECCPTCQGCKINGQ 189
            ::|..|.|..:|.|...||.|.:|...|:||:..:|...|.|.|.|   .|.|||||.||...|:
 Frog   166 YQGSHYNSSMKWRDSVQPCITRQCQEGVITESEVQCLVHCRNPQRQ---SGLCCPTCPGCIYEGR 227

  Fly   190 TVAEGHEVDASIDDRCLVCQCRGTQLTCSKKTCPVLPCPMSKQIKRPDECCPRCPQNHSFLPVP- 253
            ...||.|.... .::||.|.|.|.:..|.|:.||:|.||.........:|||:|........:| 
 Frog   228 QYKEGDEFQPE-GNKCLKCSCIGGRTQCIKEVCPILSCPQHLSHIPTGQCCPKCIGQRKVFDLPS 291

  Fly   254 GKCLFNKSVYPEKTQFMPDRCTNCTCLNGTSVCQRPTCPILECAPEFQEPDGCCPRCAVAEVRSE 318
            |.|||...||...:.||.||||.|:|.:.|.||:|...|:..|.   ::.:.||..| |:.|.:|
 Frog   292 GSCLFRSDVYDNHSTFMYDRCTTCSCKDSTVVCKRKCSPVGTCN---RDKEQCCEDC-VSHVMAE 352

  Fly   319 ----CSLDGIVYQNNETWDMGPCRSCRCNGGTIRCAQMRC-PAVKCRANEELKQPPGE------C 372
                |.....::::.|.|....|..|.|..|...|.:.:| |...|        |.|:      |
 Frog   353 EVKICKSGSKIFRDGEMWSSFNCTICSCVKGKTECRKKQCIPVNSC--------PQGKILNRKGC 409

  Fly   373 CQRCVETAGTCTVFGDPHFRTFDGKFFSFQGSCKYLLASDCMGKT--FHIRLTNEGRGTRRASWA 435
            |..|.|..|.||||||||:.||||:.|:|||:|:|:|..||...|  |.:.:.|:.|.|...||.
 Frog   410 CPICTEKPGVCTVFGDPHYNTFDGRTFNFQGTCQYVLTKDCSSSTSSFQVLVKNDARRTHSFSWT 474

  Fly   436 KTVTLSLRNLKVNLGQRMRVKVNGTRVTLPYFVVAGGQNVTIERLANGGAVMLRSEMGLTLEWNG 500
            |:|.|.:....::|.|.:.||.||||::|||      :........:|..:.:.::.||.:.|:|
 Frog   475 KSVDLIMGESSISLQQHLTVKWNGTRISLPY------ETPQFHIDLDGYLLKVTTKAGLEISWDG 533

  Fly   501 AGFLQVSVPAKFKKRLCGLCGNFNGSSRDDLTGKDGRSHGDDEVWHFANSWKVGGPKSCSRKRE- 564
            ..|::|......|.:|||||||:||..||||.|.||....|  |..|.:||:|...:.|:|.:. 
 Frog   534 DSFVEVMAAPHLKGKLCGLCGNYNGHKRDDLIGSDGDFKFD--VDDFGDSWRVESNEFCNRPQRK 596

  Fly   565 ------------FLAATPTCDKRKS-NFY-CHPLSVPALFGECNERLNPENYKAACRMDVCECP- 614
                        .|.|...|.|.|| :|. ||.....|:|           |: :|..|:|||| 
 Frog   597 TIPELCQGTVKVKLRAHRECQKLKSWDFQNCHSTVDYAMF-----------YR-SCVTDMCECPV 649

  Fly   615 SGDCHCDSFAAYAHECRRLGVQLPDWRSATNCPA 648
            ..:|:|:|..|||..|.|.||:: .|:....|.|
 Frog   650 HKNCYCESLIAYARACLREGVKV-HWKPEHTCAA 682

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cv-2NP_524809.2 VWC 184..243 CDD:214564 20/58 (34%)
VWC 256..310 CDD:278520 21/53 (40%)
VWC 319..376 CDD:214564 15/63 (24%)
VWD 371..536 CDD:214566 69/172 (40%)
C8 580..646 CDD:285899 22/67 (33%)
bmperXP_012820269.2 VWC 222..280 CDD:278520 20/58 (34%)
VWC 357..413 CDD:327433 15/63 (24%)
VWD 420..569 CDD:395046 64/154 (42%)
C8 616..680 CDD:400886 27/76 (36%)
TIL 685..738 CDD:410995
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 140 1.000 Domainoid score I4720
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H12494
Inparanoid 1 1.050 393 1.000 Inparanoid score I1936
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1104860at2759
OrthoFinder 1 1.000 - - FOG0006882
OrthoInspector 1 1.000 - - oto104930
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5817
SonicParanoid 1 1.000 - - X5778
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.090

Return to query results.
Submit another query.