DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cv-2 and Chrdl2

DIOPT Version :10

Sequence 1:NP_524809.2 Gene:cv-2 / 45280 FlyBaseID:FBgn0000395 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_001278249.1 Gene:Chrdl2 / 69121 MGIID:1916371 Length:433 Species:Mus musculus


Alignment Length:400 Identity:83/400 - (20%)
Similarity:113/400 - (28%) Gaps:155/400 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 PPVNDC---YILDKSNGTCCRRCKGCSFRGMSYESGSEWNDPEDPCKTYKCVATVVTETIQKCYS 162
            |..:.|   :.:........|..|.|.|....|..|..|:...:|..|..||         :|  
Mouse    15 PVAHSCIQEFFIVSQPSLFARSGKVCLFGEKIYTPGQSWHPYLEPQGTIYCV---------RC-- 68

  Fly   163 QCDNNQLQPPRPGECCPTCQGCKINGQTVAEGHEVDASIDDRCLVCQCRGTQLTCSKKTCPVLPC 227
            .|..|                          ||                   :.|.:..||.|.|
Mouse    69 TCSEN--------------------------GH-------------------VNCYRLRCPPLHC 88

  Fly   228 PMSKQIKRPDECCPRCPQNH--SFLPVPGK-CLFNKSVYPEKTQF---------MPDRCTNCTCL 280
              |:.:..|.:|||||...|  |.|.||.| |..|::.|.....|         :.::|..|:|:
Mouse    89 --SQPVMEPQQCCPRCVDPHVPSGLRVPLKSCQLNETTYQHGEIFSAQELFPARLSNQCVLCSCI 151

  Fly   281 NGTSVCQRPTCPILECAPEFQEPDGCCPRCAVAEVRSE--------------------------- 318
            .|.:.|...|||...|......||.||..|......|.                           
Mouse   152 EGHTYCGLMTCPEPSCPTTLPLPDSCCQTCKDRTTESSTEENLTQLQHGERHSQDPCSERRGPST 216

  Fly   319 --------------------------------------CSLDGIVYQNNETW-----DMG--PCR 338
                                                  |:.:|..|.:.|.|     ..|  ||.
Mouse   217 PAPTSLSSPLGFIPRHFQSVGMGSTTIKIILKEKHKKACTHNGKTYSHGEVWHPTVLSFGPMPCI 281

  Fly   339 SCRCNGGTIRCAQMRCPA-VKCRANEELKQPPGECCQRCVETAGTCTVFGDPHFRTFDGKFFSFQ 402
            .|.|..|...|.::.||. ..|   .:.|:..|:||:.|.|....     |.|......:.....
Mouse   282 LCTCIDGYQDCHRVTCPTQYPC---SQPKKVAGKCCKICPEDEAE-----DDHSEVISTRCPKVP 338

  Fly   403 GSCK-YLLAS 411
            |..: |.|||
Mouse   339 GQFQVYTLAS 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cv-2NP_524809.2 VWC 184..243 CDD:214564 12/58 (21%)
VWC 256..310 CDD:278520 17/62 (27%)
VWC 319..376 CDD:214564 19/64 (30%)
VWD 371..536 CDD:214566 10/41 (24%)
C8 580..646 CDD:462584
Chrdl2NP_001278249.1 VWC 40..102 CDD:450195 24/119 (20%)
VWC 255..317 CDD:450195 19/64 (30%)
CHRDL_1_2_C 352..>414 CDD:437380
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.