DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cv-2 and Otogl

DIOPT Version :9

Sequence 1:NP_524809.2 Gene:cv-2 / 45280 FlyBaseID:FBgn0000395 Length:751 Species:Drosophila melanogaster
Sequence 2:XP_038936045.1 Gene:Otogl / 685868 RGDID:1589018 Length:2223 Species:Rattus norvegicus


Alignment Length:904 Identity:172/904 - (19%)
Similarity:276/904 - (30%) Gaps:388/904 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 QSCSNEGEEVQLKNQPQIFTCFKCECQNGFV--NCRDTCPP---------------VNDCYILD- 110
            ::||:.|..:|  :....|.....:|.:.||  :|...|||               ::.||..| 
  Rat   253 RACSHAGFPIQ--DWRDDFPACTDKCDDSFVHRDCISCCPPSCTFDKQCLGSNLHCLDGCYCADA 315

  Fly   111 ---KSNGTC--CRRCKGCSFRGMSYESGSE--------------WNDPEDPC------------- 143
               ..||||  ...|. |||.|::|..||:              ||..|..|             
  Rat   316 GLIMDNGTCISLESCP-CSFHGLAYSVGSKIEQECTECVCVGGVWNCTEHDCPVQCSVVGDSHFT 379

  Fly   144 ----KTYK----CVATVV--------TETIQKCYSQCD-------------------NNQLQPPR 173
                :.|.    |...:|        |.|:||.:  |:                   |.|:...|
  Rat   380 TFDGRHYSFIGLCQYILVKGTGKDRFTITLQKAH--CEQNLGLVCLQSITLILEDDFNKQVTLSR 442

  Fly   174 PGE----------------------------------------------------------CCPT 180
            .|:                                                          .|.|
  Rat   443 GGQILTSPNQGFTLNGVVEIQTLSSLFILLRTTFGLKILFAIDGERIYIQLSSAWKRRTLGLCGT 507

  Fly   181 CQG-----------------------------------------CKINGQTVAEGHEVDASI--- 201
            ..|                                         |.||.|.:  |:.|...:   
  Rat   508 FNGNIRDDFLSPSGMIEGTPQLHAHAWRVSSTCFAPVHVPMVDPCNINQQNI--GYAVHCDVIHQ 570

  Fly   202 --------------------DDRC---------------LVCQCRGTQL-----------TCSK- 219
                                .|.|               .:|..||..:           .|.| 
  Rat   571 ELFAPCHVYVSPGLYYQLCRHDACKCGSSCLCNALAHYAYLCGQRGVPIDFRSQISFCAVVCQKG 635

  Fly   220 -----------KTCPVLPCPMSKQIKRPDECCP--RCPQNHSF-------LPV-PGKCLFNKSVY 263
                       ::|..|..|  :|.|  ::|..  .||:...:       :|: ..:|.:..|:|
  Rat   636 MLYHHCSSFCLRSCTSLSSP--EQCK--EDCAEGCNCPEGKFYEDTLNFCVPIYHCRCHYRGSIY 696

  Fly   264 PEKTQFMPDRCTNCTCLNGTSVCQRPTCP-ILECAPE--------FQEPD--------------- 304
             :..:.:|.....|.|.|||..|.....| .:...||        |.:|:               
  Rat   697 -QPGELIPTPSGLCQCSNGTVKCDETATPSTVHACPEGKEYFDCRFPDPELPAGGINCETTCANM 760

  Fly   305 --------------GCCPRCAVAEVRSECSLDGIVYQNNETWDMG-------PCRSCRCNGGTIR 348
                          ||.....:||.:.:|.:........:.|:.|       ||.:|.|..|...
  Rat   761 AMNFTCAPSSPCISGCVCAAGMAEHKGKCYVPESCPCIWKDWEYGSGEVITTPCYTCVCRRGMFN 825

  Fly   349 CAQMRCPAVKCRANEELKQPPGECCQRCVETAGTCTVFGDPHFRTFDGKFFSFQGSCKYLLASDC 413
            |....||||                         |||:||.|:.:|||        .:|...|||
  Rat   826 CTYYPCPAV-------------------------CTVYGDRHYHSFDG--------LEYDYISDC 857

  Fly   414 MGKTFHIRLTNEGRGTRRASWAKTVTLSLRNLK-----VNLGQRMRVKVNGTRVTL---PYFVVA 470
              :.|.|:.|::          ..:::..:|.|     :...:.:.:.:..|.:.|   ||....
  Rat   858 --QVFLIKSTDD----------SGISVISQNKKCFDNDIVCSKSVLISIGDTEIYLNDAPYKQKQ 910

  Fly   471 GG---QNVTIERLANGG--AVMLRSEMGLTLEWNGAGFLQVSVPAKFKKRLCGLCGNFNGSSRDD 530
            .|   ::....:|...|  .|:...|..:|:.|:....:.:.|..|:|.:|.||||||:..:.:|
  Rat   911 SGFFLESKPEYQLWKAGFYIVIYFPEEDITILWDEKTTIHIKVGPKWKNKLAGLCGNFDKCTSND 975

  Fly   531 LTGKDGRSHGDDEVWHFANSWKVGGPKSCSRKREFLAATPTCDKRKSNF-----YCHPLSVPALF 590
            :|..:.....:.:|  |.:||.:|   .|   .:.:.....|:..::.|     .|..| ...:|
  Rat   976 MTTSNNIEVRNAQV--FGDSWALG---QC---EDLIETLKPCEAHQNKFPYAKRQCSIL-YSDVF 1031

  Fly   591 GECNERLNPENYKAACRMDVCECPSG---DCHCDSFAAYAHECRRLGVQLPDWRSATNC 646
            ..|...::..::...|..|.|.|..|   :|.|.:.||||::|.:.||.: .|||.|.|
  Rat  1032 APCRNVIDVTSFAKNCHEDTCNCNLGGDCECLCTNVAAYAYKCCQEGVPV-HWRSPTVC 1089

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cv-2NP_524809.2 VWC 184..243 CDD:214564 19/121 (16%)
VWC 256..310 CDD:278520 17/91 (19%)
VWC 319..376 CDD:214564 13/63 (21%)
VWD 371..536 CDD:214566 41/177 (23%)
C8 580..646 CDD:285899 22/68 (32%)
OtoglXP_038936045.1 VWD 7..155 CDD:214566
C8 206..268 CDD:400886 4/16 (25%)
VWD 359..521 CDD:214566 19/163 (12%)
C8 564..628 CDD:400886 5/63 (8%)
TIL 632..687 CDD:410995 11/58 (19%)
TIL 730..795 CDD:410995 9/64 (14%)
VWD 826..981 CDD:214566 46/199 (23%)
C8 1016..1090 CDD:214843 24/76 (32%)
Fascin 1159..>1244 CDD:420003
VWD 1396..1569 CDD:413350
C8 1603..1673 CDD:214843
TIL 1676..1734 CDD:396409
GHB_like 2150..2223 CDD:419725
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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