DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cv-2 and muc5.2

DIOPT Version :9

Sequence 1:NP_524809.2 Gene:cv-2 / 45280 FlyBaseID:FBgn0000395 Length:751 Species:Drosophila melanogaster
Sequence 2:XP_021326453.1 Gene:muc5.2 / 572172 ZFINID:ZDB-GENE-121108-1 Length:4086 Species:Danio rerio


Alignment Length:640 Identity:166/640 - (25%)
Similarity:234/640 - (36%) Gaps:190/640 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 CFKCECQNG-FVNCR-DTCPPV--NDCYILDKSNGTCCRRC---------KGCSFRGMSYESGSE 135
            |.:...|:| |..|. :.||.:  ..| :.|.......|:|         ..|:.||:..:.   
Zfish   612 CSRLTNQSGAFSACHSEICPKIYYERC-VYDTCKCADIRKCICAAVSTYAHACAARGIILQG--- 672

  Fly   136 WNDPEDPCKTYKCVATVVTETIQKCYSQCDNNQLQPPRPGECCPTCQGCKINGQ-TVAEGH--EV 197
            |.| .|||:                 |:|..|.........|..||:  .::|| ...:|.  .|
Zfish   673 WMD-SDPCE-----------------SECSENMKHSYGMTGCGLTCR--SLSGQENTCQGSFTPV 717

  Fly   198 DASIDDRCLVCQC-RGTQLTCSKKTCPV--LPCPMSKQIKRPDECCPRCPQNHSFLPVPGKCLFN 259
            |.        |.| .||.|.......|.  .||....|:.:|.|.      :|    |.|     
Zfish   718 DG--------CVCSEGTYLNEEGICVPADQCPCYSGDQVTKPSEV------SH----VDG----- 759

  Fly   260 KSVYPEKTQFMPDRCTNCTCLNGTSVCQRP-TC--PIL--------------ECAPEFQEPD--- 304
                           ..|||..|...|..| ||  |::              ||....|:.|   
Zfish   760 ---------------LTCTCKLGKLHCSNPETCVAPMVLFKCSNYEPGKKGTECQRTCQKQDINN 809

  Fly   305 ----GCCPRC-------------AVAEVRSECSLDGIVYQNNETWDMGPCRSCRCNGGTIRCAQM 352
                ||...|             .|...:..|..:|:.|.:.|. ....|.:|.|..|...|.:.
Zfish   810 CVSTGCVSGCMCPDNLLADGQGGCVEREKCPCVHNGVTYSSGEQ-VQEDCNTCTCRNGMWDCTEK 873

  Fly   353 RCPAVKCRANEELKQPPGECCQRCVETAGTCTVFGDPHFRTFDGKFFSFQGSCKYLLASDCMG-- 415
            .|                         .||||::|:.||.|||||.:||.|.|:.:|..|...  
Zfish   874 EC-------------------------YGTCTIYGEGHFMTFDGKKYSFHGDCEQILVHDYCNTD 913

  Fly   416 -KTFHIRLTNEG--RGTRRASWAKTVTLSLRNLKVNLGQRMRVKV---NGTRVTLPYFV-VAGGQ 473
             ..:.:||..|.  .||.....:|::.|.....|:.|.:...::|   |||  ...|.: .||..
Zfish   914 QSPYSLRLVTENIPCGTSGTICSKSINLFFGRYKLILSEEKEIQVVESNGT--DYQYQIHTAGIY 976

  Fly   474 NV-TIERLANGGAVMLRSEMGLTLEWNGAGFLQVSVPAKFKKRLCGLCGNFNGSSRDDLTGKDGR 537
            || .::.|.|             |.|:....:.:.:..|||.::|||||||:|::.:|....||.
Zfish   977 NVIEVKGLLN-------------LIWDSKTSVMLQLHPKFKGKVCGLCGNFDGNANNDFMKHDGE 1028

  Fly   538 SHGDDEVWHFANSWK--VGGPKSCSRKREFLAATPTCDKRKSNF-----YCHPLSVPALFGECNE 595
            ...|..|  |.||||  .|.|...:      ...| |:|.....     .|..::.| :|.:|:.
Zfish  1029 EVTDPVV--FGNSWKSNPGCPDVSN------VMNP-CEKNPHRSAWAIKQCSIITSP-VFSDCHS 1083

  Fly   596 RLNPENYKAACRMDVCECPSG---DCHCDSFAAYAHECRRLGVQLPDWRSATNCP 647
            |::...|..||..|.|.|.||   ||.|.:.||||.|||:.|..:. |||.:.||
Zfish  1084 RVDSGPYYDACVKDTCACDSGGDCDCFCTAVAAYAAECRKTGACVA-WRSPSICP 1137

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cv-2NP_524809.2 VWC 184..243 CDD:214564 16/64 (25%)
VWC 256..310 CDD:278520 15/77 (19%)
VWC 319..376 CDD:214564 10/56 (18%)
VWD 371..536 CDD:214566 52/174 (30%)
C8 580..646 CDD:285899 27/68 (40%)
muc5.2XP_021326453.1 VWD 68..217 CDD:214566
C8 249..316 CDD:312319
TIL 320..376 CDD:307783
VWD 416..564 CDD:306577
C8 605..679 CDD:214843 17/71 (24%)
TIL 683..740 CDD:307783 16/66 (24%)
TIL 795..839 CDD:307783 8/43 (19%)
VWC_out 841..>892 CDD:214565 19/76 (25%)
VWD 868..1027 CDD:214566 54/198 (27%)
C8 1065..1137 CDD:214843 27/73 (37%)
TIL 1153..1206 CDD:307783
Atrophin-1 <1269..1639 CDD:331285
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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