DRSC/TRiP Functional Genomics Resources

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Protein Alignment cv-2 and thbs2b

DIOPT Version :10

Sequence 1:NP_524809.2 Gene:cv-2 / 45280 FlyBaseID:FBgn0000395 Length:751 Species:Drosophila melanogaster
Sequence 2:XP_694690.6 Gene:thbs2b / 566325 ZFINID:ZDB-GENE-100623-1 Length:1181 Species:Danio rerio


Alignment Length:512 Identity:111/512 - (21%)
Similarity:155/512 - (30%) Gaps:212/512 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 FRPSTQLLILIAVLLALLQGRTVDAGAGDSLSGVRQS------CSNEGEEVQLKNQPQIFTCFKC 87
            |:....|.::::.|:..||..|.:..|........||      |..:|...:.|....:.:|.||
Zfish   287 FQELKGLRVVVSNLIDGLQKVTEENTAMKEALNKMQSLSEQSMCWQDGRMFEDKEDWIVDSCTKC 351

  Fly    88 ECQNGFVNCRD-TCPPV---NDCYILDKSNGTCCRRCKGCSFRGMSYESG----SEWNDPEDPCK 144
            .||.|.|.||. |||||   |..:|    :|.||..|     ..|..|.|    |||.       
Zfish   352 TCQEGKVVCRQITCPPVACANPSFI----DGECCPVC-----LPMDSEDGWSPWSEWT------- 400

  Fly   145 TYKCVATVVTETIQKCYSQCDNNQLQPPRPGECCPTCQGCKINGQ-------------------- 189
              :|..|..:.|.|:..| ||:..          .||.|..|..:                    
Zfish   401 --QCTVTCGSGTQQRGRS-CDDTS----------NTCSGPSIQTRKCSLGKCDRRVRQDGGWSLW 452

  Fly   190 --------TVAEG-----HEVDASIDDR-CLVCQCRGTQLTCSKKTCPVLPCPMS---------- 230
                    |..||     ...:|.:..| ...|:..|.:    .::|...|||:.          
Zfish   453 SPWSSCSVTCGEGLITRIRHCNAPVPQRGGKDCEGEGRE----TQSCHTDPCPIDGGWGPWSPWA 513

  Fly   231 ----------KQIKRPDECCPRCPQNHSFLPVPGKCLFNKSVYPEKTQFMPDRCTNCTCLNGTSV 285
                      |  .|..||....||:..     .|||             .|...|       .|
Zfish   514 ACSATCGGGLK--SRVRECNSPEPQHGG-----RKCL-------------GDSIEN-------EV 551

  Fly   286 CQRPTCPILECAPEFQEPDGCCPRCAVAEVRSECSLDGIVYQNNETWDMGPC--------RSC-- 340
            |.|..|||          |||......:.|....:.||       :|:.|||        .||  
Zfish   552 CNRLECPI----------DGCLSNPCFSGVECNTASDG-------SWECGPCPNGYRGNGTSCED 599

  Fly   341 --RCN---------GGTIRCAQ-------MRCP------------AVKCRANEELKQPPGEC--- 372
              .||         ||..:|..       :.||            ....:.|:::.:|...|   
Zfish   600 VNECNMVSDLCHKVGGLQQCVNTDPGFHCLPCPPRYKGTQPYGMGVESAKTNKQVCEPYNPCKDN 664

  Fly   373 ---CQRCVETAGTC---TVFGDPHFRTFDGKFFSFQGSCKYLLASD---CMGKTFHI 420
               |.:..|    |   :.|.||.::.          .|:...|.|   | |:.|.:
Zfish   665 SHSCHKFAE----CIFLSHFTDPMYKC----------ECRIGYAGDGIIC-GEDFDL 706

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cv-2NP_524809.2 VWC 184..243 CDD:214564 16/112 (14%)
VWC 256..310 CDD:278520 13/53 (25%)
VWC 319..376 CDD:214564 19/102 (19%)
VWD 371..536 CDD:214566 13/62 (21%)
C8 580..646 CDD:462584
thbs2bXP_694690.6 TSPN 25..220 CDD:214560
VWC 330..384 CDD:278520 22/57 (39%)
TSP_1 394..439 CDD:459668 14/64 (22%)
TSP1 449..501 CDD:214559 9/55 (16%)
TSP1 506..558 CDD:214559 14/78 (18%)
EGF_3 661..700 CDD:463759 10/52 (19%)
TSP3 repeat_1C 702..737 CDD:275367 1/5 (20%)
TSP3 repeat_long 738..773 CDD:275366
TSP3 repeat_short 774..796 CDD:275365
TSP_3 797..832 CDD:367074
TSP3 repeat_long 798..832 CDD:275366
TSP3 repeat_short 833..855 CDD:275366
TSP_3 856..893 CDD:367074
TSP3 repeat_long 856..893 CDD:275365
TSP3 repeat_short 894..929 CDD:275366
TSP_3 930..963 CDD:367074
TSP_C 983..1180 CDD:461725
Blue background indicates that the domain is not in the aligned region.

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