DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cv-2 and Sspo

DIOPT Version :10

Sequence 1:NP_524809.2 Gene:cv-2 / 45280 FlyBaseID:FBgn0000395 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_001007017.1 Gene:Sspo / 474348 RGDID:1549716 Length:5141 Species:Rattus norvegicus


Alignment Length:660 Identity:159/660 - (24%)
Similarity:232/660 - (35%) Gaps:173/660 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 LKNQPQIFTCFKCECQNGFVNCRDTCPPVNDC----------------YILDKSNGTCCR-RCKG 122
            ::.:|....|.:..|         :|.|..||                .:|...|.|.|. .|.|
  Rat   777 VEREPFRLRCLESMC---------SCAPGRDCLCSVLSAYAHHCAQEGVLLQWRNETLCSVPCPG 832

  Fly   123 CSFRGMSYES-----GSEWNDPEDPCKTYKCVATVVTETIQKCYSQCD---------NNQLQPPR 173
                |..|:.     |....:||| ||           .:..|.:.|:         ..|..|| 
  Rat   833 ----GQVYQECAPACGHYCGEPED-CK-----------ELGSCVAGCNCPPGLLWDLEGQCVPP- 880

  Fly   174 PGECCPTCQGCKINGQTVAEGHEVDASIDDRCLVCQCRGTQLTCSKKTCPVLPCPMSKQIKRPDE 238
              ..||    |::.|...|............| :||.||..      .|....||....:     
  Rat   881 --SMCP----CQLGGHRYAFNTTTTLKDCSHC-ICQERGLW------NCIAHHCPRQWAL----- 927

  Fly   239 CCPRCPQNHSFLPVPGKCLFNKSVYPEKTQFMPDRCTNCTCLNGTSVCQRPTCPILECAPEFQEP 303
                |||  ..:..||.||............:......|.|.:||.:..:      .|.    .|
  Rat   928 ----CPQ--ELIYAPGACLLTCDSLGANHSCLAGSTDGCVCPSGTVLLDK------HCV----SP 976

  Fly   304 DGCCPRCAVAEVRSECSLDGIVYQNNETWDMGPCRSCRCNGGTIRCAQMRCPAVKCRANEELKQP 368
            | .||          |..:|..|..|.| ....|..|.|......|...||              
  Rat   977 D-LCP----------CRHNGQWYPPNAT-IQEDCNICVCQNQRWHCTGQRC-------------- 1015

  Fly   369 PGECCQRCVETAGTCTVFGDPHFRTFDGKFFSFQGSCKYLLASDCMGKTFHIRLTNEGRGTRRAS 433
                       :|.|...|.||:.||||..|:|.|:|:|||..:..|: |.:.:.|...|....:
  Rat  1016 -----------SGWCQASGAPHYVTFDGLVFTFPGACEYLLVREAGGR-FSVSIQNLPCGASGLT 1068

  Fly   434 WAKTVTLSLRNLKVNLGQRMRVKVNGTRVTLPYFVVAGGQNVTIERLANGGAVMLRSEMGLTLEW 498
            ..|.:.:.|.:..|::.:...|.|||..:.||  .|..|..:::...  |..::|.:.:||||.|
  Rat  1069 CTKALAVRLDSTVVHMLRGQAVTVNGVSIKLP--KVYTGPGLSLHHA--GLFLLLTTRLGLTLLW 1129

  Fly   499 NGAGFLQVSVPAKFKKRLCGLCGNFNGSSRDDLTGKDGRSHGDDEVWHFANSWKVGG-------- 555
            :|...:.|.:...|..|:.||||||:|...:||..:.|......|:  .|:||::..        
  Rat  1130 DGGTRVLVQLSPHFHGRVTGLCGNFDGDVSNDLRSRQGVLEPTAEL--TAHSWRLNPLCPEPGDL 1192

  Fly   556 PKSCSRKREFLAATPTCDKRKSNF---YCHPLSVPALFGECNERLNPENYKAACRMDVCECPSG- 616
            |..||           .:..:.|:   :|..:..| :|..|:..:.|:.|...|..|.|.|.:| 
  Rat  1193 PHPCS-----------VNAHRVNWARAHCEVILQP-IFAPCHTEVPPQQYYEWCVYDACGCDTGG 1245

  Fly   617 --DCHCDSFAAYAHECRRLGVQLPDWRSATNCPAGWRRNATLSSFKGNQFYGDPSFSRMKGRRQK 679
              :|.|.:.|.||.||.|....: .|||...||.         ..:|.|.| :|..|........
  Rat  1246 DCECLCSAIATYADECARHRHHV-RWRSQELCPL---------QCEGGQVY-EPCGSTCPPTCHD 1299

  Fly   680 NH-QLRLQLQ 688
            :| :||...|
  Rat  1300 HHPELRWHCQ 1309

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cv-2NP_524809.2 VWC 184..243 CDD:214564 11/58 (19%)
VWC 256..310 CDD:278520 11/53 (21%)
VWC 319..376 CDD:214564 11/56 (20%)
VWD 371..536 CDD:214566 51/164 (31%)
C8 580..646 CDD:462584 22/68 (32%)
SspoNP_001007017.1 VWD 192..341 CDD:214566
C8 396..468 CDD:462584
TIL 472..527 CDD:410995
VWD 556..716 CDD:214566
C8 <770..826 CDD:214843 10/57 (18%)
TIL 830..883 CDD:410995 15/71 (21%)
VWD 1008..1167 CDD:214566 54/188 (29%)
C8 1209..1276 CDD:462584 22/68 (32%)
TIL 1280..1336 CDD:410995 9/31 (29%)
LDLa 1381..1416 CDD:238060
LDLa 1421..1455 CDD:238060
LDLa 1457..1491 CDD:238060
LDLa 1497..1528 CDD:197566
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1533..1567
Ldl_recept_a 1568..1604 CDD:395011
TSP1 1702..1753 CDD:214559
TSP1_spondin 1759..1812 CDD:480609
TIL 1817..1873 CDD:410995
TSP1 1917..1970 CDD:214559
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2087..2109
FA58C <2111..2225 CDD:330301
LDLa 2236..2270 CDD:238060
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2262..2335
LDLa 2392..2426 CDD:238060
LDLa 2449..2483 CDD:238060
TSP1_spondin 2486..2537 CDD:480609
TSP1 2543..2595 CDD:214559
TIL 2618..2660 CDD:410995
TSP1 2703..2752 CDD:214559
TSP1 2760..2813 CDD:214559
TSP_1 2819..2867 CDD:459668
TIL 2871..2930 CDD:410995
VWC_out 2932..2979 CDD:214565
TSP1 2972..3023 CDD:214559
TSP1_spondin 3029..3067 CDD:480609
TIL 3075..3127 CDD:460351
TSP1 3240..3292 CDD:214559
TIL 3300..3350 CDD:460351
TSP1_spondin 3390..>3435 CDD:480609
TSP1 3460..3504 CDD:214559
TIL 3514..3570 CDD:460351
TSP1 3633..3677 CDD:214559
TSP1 3810..3862 CDD:214559
TSP1 3879..3927 CDD:214559
TSP1 3945..3998 CDD:214559
TSP1 4003..4055 CDD:214559
TIL 4058..4113 CDD:460351
TSP1 4158..4208 CDD:214559
TSP1 4252..4303 CDD:214559
TSP1 4367..4418 CDD:214559
TIL 4422..4477 CDD:410995
TSP1 4611..4659 CDD:214559
TIL 4673..4719 CDD:460351
TSP1_spondin 4761..4811 CDD:480609
TIL 4814..4868 CDD:460351
TIL 4920..4978 CDD:460351
VWC 4980..5035 CDD:450195
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.