DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cv-2 and Tecta

DIOPT Version :9

Sequence 1:NP_524809.2 Gene:cv-2 / 45280 FlyBaseID:FBgn0000395 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_001100284.1 Gene:Tecta / 300653 RGDID:1309824 Length:2155 Species:Rattus norvegicus


Alignment Length:900 Identity:181/900 - (20%)
Similarity:287/900 - (31%) Gaps:293/900 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 CCQSSGQWKFPAQQPRKSLASRRRHTGFRPSTQLLILIA----VLLALLQGRTVDAGAGDSLSGV 62
            |...|...||...:.|..:.:...::.|.....::.:.|    .|..|.|....::...||::..
  Rat   896 CNNDSELLKFYRSRSRCGIINDPSNSSFLECHGVVNVTAYYRTCLFRLCQSGGNESELCDSVARY 960

  Fly    63 RQSCSNEGEEV-----------QLKNQPQIFTCFKC--ECQNGFVN--CRDTCPPVNDC---YIL 109
            ..:|.|...||           :.........|..|  .|:...:.  |.|:|.....|   |.|
  Rat   961 ASACKNADVEVGPWRTYDFCPLECPENSHFEECMTCTETCETLALGPICVDSCSEGCQCDEGYAL 1025

  Fly   110 DKSNGTCCRRCK-GCSFRGMSYESGSE-WNDPEDPCKTY-KCVAT---VVTETI-----QKCYSQ 163
            ..|.  |..|.: ||:|.|....:... |.|.:  |:.: .|..|   |..|||     ..|..:
  Rat  1026 QGSQ--CVTRSECGCNFEGHQLATNETFWVDQD--CQIFCYCNGTDNSVHCETIPCRDDDYCMEE 1086

  Fly   164 CDNNQLQPPRPGEC---------------------CPTCQGCKINGQTVAEGHE---VDASIDDR 204
            ......||.....|                     ||... |....:::::...   |.|..:||
  Rat  1087 SGLYYCQPRTDASCIVSGYGHYLTFDGYPFDFQTSCPLIL-CTTGSRSISDSFPKFIVTAKNEDR 1150

  Fly   205 -----------------------------CLVCQCR---------------------------GT 213
                                         .||...|                           |.
  Rat  1151 DPSLALWVKQVDVTVFGYSIVIHRAYKHTVLVNNERLYLPLKLGQGKINIFSFGFHVVVETDFGL 1215

  Fly   214 QLTCSKKTCPVLPCPMSKQ------------------------------------IKRPDEC--- 239
            ::....||...:..|.|.|                                    :||...|   
  Rat  1216 KVVYDWKTFLSITVPRSMQNSTYGLCGRYNGNPGDDLEMPMGLLALSINEFGQSWVKRDTFCQVG 1280

  Fly   240 ----CPRCPQNHSFLPVPGKCLFNKSVYPEKT------------QFMPDRCTNCTCLNG------ 282
                ||.|.:...|..|...|    |:.|.:.            .|....|...:|::|      
  Rat  1281 CGDRCPSCAKVEGFSKVQQLC----SLIPNQNAGFAKCHSKVNPTFFYKNCLFDSCIDGGAVQTA 1341

  Fly   283 -------TSVCQRP---------------TCPILECAPEFQEPDG--------CCPRCAVAEVRS 317
                   .|.||..               |||          |:.        |.||||...::|
  Rat  1342 CSWLQNYASTCQTQGVAVTGWRNYTSCSVTCP----------PNSHYESCVSVCQPRCAAIRLKS 1396

  Fly   318 ECS-----------------------------LDGIVYQNNETWDMGPC-RSCRCNGGTIRCAQM 352
            :|:                             .||..|:..:.:..|.| |.|||    .|...:
  Rat  1397 DCNHYCVEGCQCDAGYVLNGKSCILPHNCGCYSDGKYYEPKQLFWNGDCTRRCRC----FRRNLI 1457

  Fly   353 RCPAVKCRANEELKQPPGECCQR-----CVET-AGTCTVFGDPHFRTFDGKFFSFQGSCKYLLAS 411
            :|...:|:::|       ||..|     |..| ...|...|...||||||.|..|..:|.::|::
  Rat  1458 QCDPRQCKSDE-------ECALRSGVRGCFSTKTSYCLAAGGGVFRTFDGAFLRFPANCAFVLST 1515

  Fly   412 DCM---GKTFHIRLTNEGRGTRRASWAKTVTLSLRNLKVNLGQRMRVKVNGTRVTLPYFVVAGGQ 473
            .|.   ..:|.:.:..:...:...:....|...:...::.:..|..||||||:|.:|:..     
  Rat  1516 ICQKLPDISFQLIINFDKWSSPNLTIISPVYFYINEEQILINDRNTVKVNGTQVNVPFIT----- 1575

  Fly   474 NVTIERLANGGAVMLRSEMGLTLEWNGAGFLQVSVPAKFKKRLCGLCGNFNGSSRDDLTGKDGRS 538
            .:..:..::.|.:::.:...:.:.:||...:::|:..:.:.::|||||||||...||.....|:.
  Rat  1576 GLATKIYSSEGFLVIDTSPDIQIYYNGFNVIKISISERLQNKVCGLCGNFNGDMTDDYVTLRGKP 1640

  Fly   539 HGDDEVWHFANSWKVGGPK------SCSRKREFLAATPTCDK-----RKSNFYCHPLS-VPALFG 591
            .....|  .|.|||..|.:      ||: :.:|.....|||.     .:.:.||..|: :...|.
  Rat  1641 VVSSVV--LAQSWKTNGMQKRPLTPSCN-ELQFSQYAATCDNVHIQAMQGDGYCLKLTDMKGFFQ 1702

  Fly   592 ECNERLNPENYKAACRMDVCECPSGDCHCDSFAAYAHECRRLGVQLPDWRSATNC 646
            .|...|:|..:..:|.:|.|........|.|.|||...||..|:...:|....||
  Rat  1703 PCYGLLDPLPFYESCYLDGCYNHKKFQLCGSLAAYGEACRSFGILSTEWIEKENC 1757

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cv-2NP_524809.2 VWC 184..243 CDD:214564 19/160 (12%)
VWC 256..310 CDD:278520 16/101 (16%)
VWC 319..376 CDD:214564 17/91 (19%)
VWD 371..536 CDD:214566 44/173 (25%)
C8 580..646 CDD:285899 19/66 (29%)
TectaNP_001100284.1 NIDO 98..254 CDD:214712
VWD 322..478 CDD:278521
C8 517..591 CDD:214843
TIL 597..650 CDD:280072
VWC 652..706 CDD:302663
VWD 703..865 CDD:214566
C8 905..981 CDD:214843 13/75 (17%)
TIL 984..1036 CDD:280072 12/53 (23%)
VWD 1100..1258 CDD:278521 17/158 (11%)
C8 1298..1368 CDD:285899 10/73 (14%)
TIL 1372..1425 CDD:280072 10/62 (16%)
VWD 1487..1639 CDD:278521 39/156 (25%)
C8 1685..1757 CDD:214843 19/71 (27%)
ZP 1805..2059 CDD:214579
Zona_pellucida 1937..2057 CDD:278526
FXa_inhibition 2089..2121 CDD:291342
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1216
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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