DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cv-2 and Otog

DIOPT Version :9

Sequence 1:NP_524809.2 Gene:cv-2 / 45280 FlyBaseID:FBgn0000395 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_001099732.1 Gene:Otog / 292918 RGDID:1306610 Length:2902 Species:Rattus norvegicus


Alignment Length:683 Identity:164/683 - (24%)
Similarity:239/683 - (34%) Gaps:207/683 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 LSGVRQSC-----SNEGEEVQLKNQPQIFTCFKCECQNGFVNCR---------DTCPPVNDCYI- 108
            |||.|:.|     ::.|..:||   ||:....:.:...|:|..|         |....|   || 
  Rat   205 LSGEREICLAKEVTHGGIRIQL---PQVVAGVQLQQLAGYVIARYPSAFTLAWDGASAV---YIK 263

  Fly   109 -----LDKSNGTCCRRCKGCSFRGMSYESGSEWNDPEDPCKT-YKCVATVVTETIQKCYSQCDNN 167
                 :..::|.|                |:...||:|...| |..:...:.|.:.....|..|:
  Rat   264 MSPEFVGWTHGLC----------------GNNNADPQDDLVTSYGKLTDDIGEFVHSWQEQVPNS 312

  Fly   168 QLQP-----PRPGECCPTCQGCKINGQTVAEGHEV-DASIDDRCL---------------VCQCR 211
            ...|     |||    |..|....:.|.|.|..|| ..|..|.|.               :||..
  Rat   313 PPVPVMSSLPRP----PCLQQSPASMQGVYERCEVLLRSPFDACHAYVSPLPFTASCTSDLCQSG 373

  Fly   212 GTQLTCSK------KTCPVLPCPMSKQIKRPDECCPRCPQ-----NHSFLPVPGKCLFNKSVYPE 265
            |.:.|..:      :.|.....|:.....:..:|..||.:     |......|..|..:.|....
  Rat   374 GDEATWCRALTEYARACAQAGRPLQGWRTQLSQCTVRCKEKIFIYNECIACCPASCQSHASCVDS 438

  Fly   266 KTQFMPDRCTN-CTCLNG----TSVCQRPTCPILECAPEFQ---EPDGCCPRCAVAEVRSECSLD 322
            :.     .|.: |.|.||    ..||..|.    ||..||.   .|.|                 
  Rat   439 EI-----ACVDGCYCPNGLIFEDGVCMSPA----ECPCEFHGTLHPPG----------------- 477

  Fly   323 GIVYQNNETWDMGPCRSCRCNGGTIRCAQMRCPAVKCRANEELKQPPGECCQRCVETAGTCTVFG 387
            .:|.::        |.:|.|..|...|:...|||                         .|:|.|
  Rat   478 SVVTED--------CNTCTCTAGKWVCSSSVCPA-------------------------ECSVTG 509

  Fly   388 DPHFRTFDGKFFSFQGSCKYLLASDCMGKTFHIRLTNEGRGTRRASWAKTVTLSLRNLKVNLGQR 452
            |.||.||||:.::|..:|:|:||......||.:.|.|...|..:..      ..::::.|.|.|.
  Rat   510 DIHFTTFDGRRYTFPATCQYILAKSRSSGTFTVTLQNAPCGLNQDG------ACVQSVSVILHQD 568

  Fly   453 MRVKVNGT-----------RVTLPY----FVVAGGQNVTIERLANGGAVMLRSEMGLTLEWNGAG 502
            .|.:|..|           ::|.||    |.:....:|.:....|.|..:|....||.|      
  Rat   569 PRRQVTLTQAGDVLLFDQYKITPPYSDDAFEIQKLSSVFLRVRTNVGVRILYDREGLRL------ 627

  Fly   503 FLQVSVPAKFKKRLCGLCGNFNGSSRDDLTGKDGRSHGDDEVWHFANSWKVGGPKSCSRKREFLA 567
            :|||.  .::.:...||||.|||:::||.....|......::  |.||||.           ..|
  Rat   628 YLQVD--QRWVEDTVGLCGTFNGNTQDDFLSPVGVPESTPQL--FGNSWKT-----------LSA 677

  Fly   568 ATP--------TCD--KRKSNFYCHPLSV--PALFGECNERLNPENYKAACRMDVCECPSGDCHC 620
            ..|        .||  .:.:::.....||  ..||..|:..|:|..|...||.|.|.| ...|.|
  Rat   678 CVPLAPGSLLDPCDVHLQAASYALQACSVLTGELFAPCSAYLSPIPYFEQCRRDACRC-GQPCLC 741

  Fly   621 DSFAAYAHECRRLGVQLPDWRS-----ATNCPA 648
            .:.|.||..|||.|:.: |:|:     |.:|.|
  Rat   742 ATLAHYARLCRRHGLPV-DFRARLPACALSCEA 773

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cv-2NP_524809.2 VWC 184..243 CDD:214564 15/80 (19%)
VWC 256..310 CDD:278520 16/61 (26%)
VWC 319..376 CDD:214564 9/56 (16%)
VWD 371..536 CDD:214566 49/179 (27%)
C8 580..646 CDD:285899 25/72 (35%)
OtogNP_001099732.1 VWD 143..293 CDD:278521 25/109 (23%)
C8 339..403 CDD:285899 12/63 (19%)
TIL 417..465 CDD:280072 12/56 (21%)
VWC 467..>502 CDD:302663 10/59 (17%)
VWD 505..660 CDD:278521 49/168 (29%)
C8 700..761 CDD:285899 23/62 (37%)
TIL 771..835 CDD:280072 2/3 (67%)
TIL 875..937 CDD:280072
VWD 968..1122 CDD:214566
C8 1157..1231 CDD:214843
Fascin <1296..1387 CDD:304938
VWD 2089..2243 CDD:278521
C8 2279..2347 CDD:214843
TIL 2350..2411 CDD:280072
CT 2819..2901 CDD:214482
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1216
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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