DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cv-2 and Muc6

DIOPT Version :10

Sequence 1:NP_524809.2 Gene:cv-2 / 45280 FlyBaseID:FBgn0000395 Length:751 Species:Drosophila melanogaster
Sequence 2:XP_038953937.1 Gene:Muc6 / 282586 RGDID:628826 Length:1449 Species:Rattus norvegicus


Alignment Length:667 Identity:155/667 - (23%)
Similarity:229/667 - (34%) Gaps:224/667 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 CQNGFVN--CRDTCPPVNDCYILDKSNGTCCRRC----------KGCSFRGMSYESGSEWNDPED 141
            |....:|  |.:|     .|.:|.| .|:...:|          |.|.::..:||          
  Rat   583 CSMSQLNKVCAET-----HCSMLLK-KGSVFEKCHNVVNPQPFYKRCVYQACNYE---------- 631

  Fly   142 PCKTYKCVATVVTETIQKCYSQ----------CDNNQLQPPRPGECCPTCQGCKINGQTVAEGHE 196
              :|:..:.:.:......|.|:          .||          |...|.|.:.        ..
  Rat   632 --ETFPHICSALGAYAHACSSRGVLLWGWRNSVDN----------CTVPCSGNRT--------FS 676

  Fly   197 VDASIDDR-CLVCQCRGTQLTCSKKTCPV--LPCPMSKQIKRPDEC-----CPRCPQNHSFLPVP 253
            .|:...|| ||....|.|:  |.....||  ..||....:....||     ||....:|.|:...
  Rat   677 YDSKACDRTCLSLSDRETE--CHASPVPVDGCNCPEGTYLNHKAECVHKTQCPCLLDSHKFVQAD 739

  Fly   254 GKCLFNKSVYPEKTQFMPDRCTNCTCLNGTSVCQR------------------------------ 288
            ...:.|..:              |.|:||...|.|                              
  Rat   740 QSTMINGVI--------------CYCINGRLSCPRQAEMFFASCPEPKTFQSCSQSSEDKFGAAC 790

  Fly   289 -PTCPIL----ECAPEFQEPDGC-CPR---------CAVAEVRSECSLD--GIVYQNNETWDMGP 336
             |||.:|    .|.|...| .|| ||:         |..||   ||..|  |..|........ .
  Rat   791 APTCQMLATGTACVPTKCE-SGCVCPKGLYENSDGQCVPAE---ECPCDYAGTSYPGGSELHT-D 850

  Fly   337 CRSCRCNGGTIRC-AQMRCPAVKCRANEELKQPPGECCQRCVETAGTCTVFGDPHFRTFDGKFFS 400
            |::|.|:.|...| ...:||:                         ||.::|:.|..||||:.|.
  Rat   851 CKTCTCSQGRWTCQLSTQCPS-------------------------TCVLYGEGHIITFDGQRFV 890

  Fly   401 FQGSCKYLLASDCMG-----KTFHIRLTNEGRGTRRASWAKTVTLSLRNLKVNLGQRMRVKVNGT 460
            |.|:|:|.||:|..|     .||.:...|...|....:.::.:.:||..|.:.:... ...|:|.
  Rat   891 FDGNCEYTLATDDCGANSSQPTFKVLTENVICGKSGVTCSRAIKISLGGLSITMADG-NYTVSGE 954

  Fly   461 RVTLPYFVVAGGQNVTIERLANGGAVMLRSEMGLTLEWNGAGFLQVSVPAKFKKR----LCGLCG 521
            ...:...|.....|:.::       :.:...:.|||.||    ..:||..|.::.    ||||||
  Rat   955 EPLVHLQVKPSPLNLVLD-------IDIPGRLNLTLMWN----KHMSVSMKIRRETQDPLCGLCG 1008

  Fly   522 NFNGSSRDDLTGKDGRSH--GDDEVWHFANSWKVGGPKSCSRKREFLAATPTCDKRKSNFYCHPL 584
            |.||:.:||.   :.||.  ..:|: .|.||||               .:|.|.  .:::...|.
  Rat  1009 NSNGNMKDDF---ETRSKYVASNEL-EFVNSWK---------------ESPLCG--DASYAVDPC 1052

  Fly   585 SVPAL----------------FGECNERLNPENYKAACRMDVCECPSG---DCHCDSFAAYAHEC 630
            |:...                |..|:.::....|..||..|.|.|.:|   :|.||:.||||..|
  Rat  1053 SLNTFRRSWAERKCNIINSQTFAACHSKVYHLPYYEACVHDACGCDTGGDCECLCDAVAAYAKAC 1117

  Fly   631 RRLGVQLPDWRSATNCP 647
            ...||.: |||:...||
  Rat  1118 LDKGVCV-DWRTPDFCP 1133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cv-2NP_524809.2 VWC 184..243 CDD:214564 16/66 (24%)
VWC 256..310 CDD:278520 18/98 (18%)
VWC 319..376 CDD:214564 11/59 (19%)
VWD 371..536 CDD:214566 47/173 (27%)
C8 580..646 CDD:462584 24/84 (29%)
Muc6XP_038953937.1 VWD 49..198 CDD:459671
C8 <250..302 CDD:462584
TIL 307..362 CDD:410995
VWC 364..>408 CDD:450195
VWD 391..554 CDD:214566
C8 593..665 CDD:214843 15/99 (15%)
TIL 669..726 CDD:410995 16/66 (24%)
TIL 769..832 CDD:410995 14/66 (21%)
VWD 861..1022 CDD:214566 50/200 (25%)
C8 1061..1133 CDD:214843 22/72 (31%)
Blue background indicates that the domain is not in the aligned region.

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