DRSC/TRiP Functional Genomics Resources

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Protein Alignment cv-2 and Chrd

DIOPT Version :10

Sequence 1:NP_524809.2 Gene:cv-2 / 45280 FlyBaseID:FBgn0000395 Length:751 Species:Drosophila melanogaster
Sequence 2:XP_006248619.1 Gene:Chrd / 117275 RGDID:620181 Length:970 Species:Rattus norvegicus


Alignment Length:256 Identity:69/256 - (26%)
Similarity:95/256 - (37%) Gaps:58/256 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   172 PRPGECCPTCQG----------CKINGQTVAEGHEVDASIDDRCLVCQCRGTQLTCSKKTCPVLP 226
            |.|....|...|          |...||....|.....:.|..|.:|.|:...:.|....||...
  Rat   701 PGPEAPVPAKHGSSGRPRDPNTCFFEGQQRPHGARWAPNYDPLCSLCTCQRRTVICDPVVCPPPS 765

  Fly   227 CPMSKQIKRPDECCPRCP--QNHSFLP-----VPGK-CLF--NKSVYPEKTQFMP-------DRC 274
            ||  ..::..|:|||.||  |....||     .||: |.|  ::|.....|::.|       .:|
  Rat   766 CP--HPVQALDQCCPVCPEKQRSRDLPSLPNLEPGEGCYFDGDRSWRAAGTRWHPVVPPFGLIKC 828

  Fly   275 TNCTCLNGTSV--CQRPTCPILECA-PEFQEPDGCCPRCAV-------------AEVRSECSLDG 323
            ..|||...|..  |::..||.|.|| |....|..||.:|.|             |:....|...|
  Rat   829 AVCTCKGATGEVHCEKVQCPRLACAQPVRANPTDCCKQCPVGSGTHAKLGDPMQADGPRGCRFAG 893

  Fly   324 IVYQNNETW--DMGP-----CRSCRCNGGTIRCAQMRC-PAVKCRANEELKQPPGECCQRC 376
            ..:..|::|  .:.|     |.:|||..|...|.:..| |.:.|.:.:|     ..||..|
  Rat   894 QWFPENQSWHPSVPPFGEMSCITCRCGAGVPHCERDDCSPPLSCGSGKE-----SRCCSHC 949

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cv-2NP_524809.2 VWC 184..243 CDD:214564 17/58 (29%)
VWC 256..310 CDD:278520 20/65 (31%)
VWC 319..376 CDD:214564 17/64 (27%)
VWD 371..536 CDD:214566 3/6 (50%)
C8 580..646 CDD:462584
ChrdXP_006248619.1 VWC 73..147 CDD:450195
CHRD 192..295 CDD:214804
CHRD 303..416 CDD:214804
CHRD 422..539 CDD:214804
CHRD 552..664 CDD:214804
VWC 723..780 CDD:450195 17/58 (29%)
VWC 801..867 CDD:214564 20/65 (31%)
VWC 889..949 CDD:450195 17/64 (27%)
Blue background indicates that the domain is not in the aligned region.

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