DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cv-2 and Vwf

DIOPT Version :9

Sequence 1:NP_524809.2 Gene:cv-2 / 45280 FlyBaseID:FBgn0000395 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_446341.1 Gene:Vwf / 116669 RGDID:621759 Length:2812 Species:Rattus norvegicus


Alignment Length:671 Identity:165/671 - (24%)
Similarity:232/671 - (34%) Gaps:235/671 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 SCSNEGEEVQLKNQPQIFTCFKCECQNGFVNCRDTCPPVNDCYILDKSNGTCCRRCKGCSFRGMS 129
            :|:.:|..:..: :|. |....|.....::.|.::|            |.||         |.:|
  Rat   632 ACARKGVHIGWR-EPD-FCALSCPQGQVYLQCGNSC------------NMTC---------RSLS 673

  Fly   130 YESGSEWNDPEDPCKTYKCVATVVTETIQKCYSQCDNNQLQPPRPGECCPTCQ-GCKINGQTVAE 193
            .        |::.|... |        ::.|:  |.....|..| |:|.|..| .|..:|:... 
  Rat   674 L--------PDEECSEV-C--------LEGCF--CPPGLYQDER-GDCVPKAQCPCYHDGELFQ- 717

  Fly   194 GHEVDASI-DDRCLVCQCRGTQLTC-----SKKTCP--VLPCPMSKQIKRPDECCPR-----CPQ 245
                .|.| .|...:|.|....:.|     |....|  ||..|:|.:.||...|.|.     ||.
  Rat   718 ----PADIFSDHHTMCYCEDGFMHCTTSGASGSLLPNIVLSSPLSHRSKRSLSCRPPMVKLVCPA 778

  Fly   246 NHSFLPVPGKCLFNKSVYPEKTQFMPDRCTNCTCLNGTSVCQRPTCPILECAPEFQEPD------ 304
            ::                                         |....||||...|..|      
  Rat   779 DN-----------------------------------------PRAQGLECAKTCQNYDLECMSL 802

  Fly   305 ----GC-CP--------RCAVAEVRSECSLDGIVYQNNETWDMGPCRSCRCNGGTIRCAQMRCPA 356
                || ||        ||...| |..|...|..|...:|..:| |.:|.|......|....|.|
  Rat   803 GCVSGCLCPPGMVRHENRCVALE-RCPCFHQGEAYSPGDTVKIG-CNTCVCRDRRWNCTTHVCDA 865

  Fly   357 VKCRANEELKQPPGECCQRCVETAGTCTVFGDPHFRTFDGKFFSFQGSCKYLLASD-CMGK--TF 418
                                     ||:..|..|:.||||..:.|.|.|:|:|..| |.|.  ||
  Rat   866 -------------------------TCSALGMAHYLTFDGLKYLFPGECQYVLVQDYCGGSSGTF 905

  Fly   419 HIRLTNEGRGTRRASWAKTVT-------LSLRNLKVNLGQRMRVKVNGTRVTLPYFVVAGGQNVT 476
            .|.:.|||.........|.||       :.|.|.:||:.:.::.:.:                  
  Rat   906 RILVGNEGCTYPSVKCKKRVTILVDGGEIELFNGEVNVKRPLKDESH------------------ 952

  Fly   477 IERLANGGAVMLRSEMGLTLEWNGAGFLQVSVPAK--FKKRLCGLCGNFNGSSRDDLTGKDGRSH 539
            .|.:.:|..|:|....||::.|:..  |.:||..|  :::.:|||||||:|...:|.|...  ..
  Rat   953 FEMVESGQYVILLLGQGLSVVWDHR--LSISVVLKYTYQEHVCGLCGNFDGIQNNDFTSSS--LQ 1013

  Fly   540 GDDEVWHFANSWKVGGPKSCSRKREFLAATPTC-DKRK-----SNFYCH-------------PLS 585
            .:::...|.|||||               :|.| |.||     |...||             .:.
  Rat  1014 VEEDPIDFGNSWKV---------------SPQCADTRKLSLDVSLAACHNNIMKQTMVDSSCRIL 1063

  Fly   586 VPALFGECNERLNPENYKAACRMDVCECPS-GD--CHCDSFAAYAHECRRLGVQLPDWRSATNCP 647
            ...:|..||..::||.|...|..|.|.|.| ||  |.||:.|||||.|.:.| |:..||..|.||
  Rat  1064 TSDIFQGCNRLVDPEPYLDICIYDTCSCESIGDCSCFCDTIAAYAHVCAQHG-QVVAWRKPTLCP 1127

  Fly   648 AG--------------WRRNA 654
            ..              ||.|:
  Rat  1128 QSCEERNVRENSYECEWRYNS 1148

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cv-2NP_524809.2 VWC 184..243 CDD:214564 18/71 (25%)
VWC 256..310 CDD:278520 11/72 (15%)
VWC 319..376 CDD:214564 11/56 (20%)
VWD 371..536 CDD:214566 50/176 (28%)
C8 580..646 CDD:285899 29/81 (36%)
VwfNP_446341.1 VWD 35..179 CDD:278521
C8 218..292 CDD:214843
TIL 295..348 CDD:280072
VWD 377..540 CDD:214566
C8 580..648 CDD:285899 3/17 (18%)
TIL 652..707 CDD:280072 18/95 (19%)
VWD 856..1011 CDD:214566 53/199 (27%)
C8 1053..1127 CDD:214843 27/74 (36%)
TIL 1146..1196 CDD:280072 1/3 (33%)
VWA_N2 1198..1276 CDD:292782
VWA 1277..1449 CDD:214621
VWA 1498..1658 CDD:278519
VWA 1691..1862 CDD:278519
VWD 1950..2102 CDD:278521
C8 2136..2199 CDD:285899
TIL 2203..2254 CDD:280072
VWC 2257..2321 CDD:214564
VWC 2431..2494 CDD:214564
VWC 2581..2643 CDD:302663
CT 2726..2807 CDD:214482
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1216
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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