DRSC/TRiP Functional Genomics Resources

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Protein Alignment csw and ptpru

DIOPT Version :10

Sequence 1:NP_477131.1 Gene:csw / 45278 FlyBaseID:FBgn0000382 Length:945 Species:Drosophila melanogaster
Sequence 2:XP_012812827.1 Gene:ptpru / 733850 XenbaseID:XB-GENE-922688 Length:1439 Species:Xenopus tropicalis


Alignment Length:274 Identity:91/274 - (33%)
Similarity:136/274 - (49%) Gaps:48/274 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   545 YIATQGCLLTQQVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSEQFGHARIQC 609
            :|||||    .:.:.:.|||.|||||:...|||.||..|.|:.||::||||  .|:.:|..|:..
 Frog   952 FIATQG----PKQDMIYDFWRMVWQEHVSSIVMITKLVEVGRVKCSKYWPD--TSDTYGDIRVTL 1010

  Fly   610 VSENSTSDYTLREFLVSWRDQPAR-RIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAQAG 673
            ::..:.::|::|...:..|....| .:..:||..|||||||.....:|.|::.|.      :...
 Frog  1011 LNTETLAEYSVRTLTLERRGYTVRHEVKQFHFLSWPDHGVPYHATGLLAFIRRVK------SSTP 1069

  Fly   674 EKPGPICVHCSAGIGRTGTFIVIDMILDQIVRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFV 738
            ...||:.||||||.||||.:||:|::||.....|:   :||...::.:.|:|..:|||:.||.|:
 Frog  1070 PDAGPVVVHCSAGAGRTGCYIVLDVMLDMAECEGV---VDIYNCVKTLCSRRINMVQTQEQYVFI 1131

  Fly   739 YYAV-----------------QHY-------IQTLIARKRAEEQSL-----QVGREYTNIKYTGE 774
            :.|:                 |.|       .|:.....|.|.|:|     |:|.|..:|.....
 Frog  1132 HDAILEACLCGDTAIPACDFRQTYKEMLQIDTQSNSTHLRDEFQTLNSVTAQLGVEECSIALLPH 1196

  Fly   775 IGNDSQRS--PLPP 786
             ..|..||  .|||
 Frog  1197 -NRDKNRSMDVLPP 1209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cswNP_477131.1 SH2_C-SH2_SHP_like 211..307 CDD:198185
PTPc-N11_6 352..748 CDD:350392 76/227 (33%)
ptpruXP_012812827.1 MAM 27..182 CDD:459878
IG_like 192..278 CDD:214653
fn3 287..361 CDD:394996
FN3 <343..>624 CDD:442628
fn3 490..568 CDD:394996
PTP_DSP_cys 931..1141 CDD:475123 74/203 (36%)
PTP_DSP_cys 1227..1431 CDD:475123
Blue background indicates that the domain is not in the aligned region.

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