DRSC/TRiP Functional Genomics Resources

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Protein Alignment csw and Ptpn13

DIOPT Version :10

Sequence 1:NP_477131.1 Gene:csw / 45278 FlyBaseID:FBgn0000382 Length:945 Species:Drosophila melanogaster
Sequence 2:XP_038948202.1 Gene:Ptpn13 / 498331 RGDID:1563360 Length:2465 Species:Rattus norvegicus


Alignment Length:716 Identity:171/716 - (23%)
Similarity:239/716 - (33%) Gaps:273/716 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 GSKGRRSEERE-------RSGKFKASKGRKAKVTPPTETPEAQEPACKNCMTHDELAQIIKGVAK 121
            |.||..|..::       |...|:.|..|...|     ..:.||            |::|:.:..
  Rat  2004 GGKGLSSPRKKSADLMEARDFSFQESDSRDDDV-----YDDPQE------------AEVIQSLLD 2051

  Fly   122 GADAQ-RNRDNRLQRRRRPLSAQPSAAASASTSTESLHRLTPSPQASYPATPTSWTATP-----P 180
            ..|.: :|..|:.:..||..|..|               |..:.:||.....|....:|     |
  Rat  2052 VVDEEAQNLLNQTKASRRACSPDP---------------LRTNGEASEDGEDTDCDGSPLPEDVP 2101

  Fly   181 QFPAAFGGASCSNSTLSLLATMRVQLHGYTWFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGD 245
            :.....||.:|                    |...:...:.||.:.|.....|   |||      
  Rat  2102 ESVNGGGGKAC--------------------FASLIQASQEEKPVKEEATQES---RES------ 2137

  Fly   246 FVLSVRTDDKVTHVMIRWQDKKYDVGGGESFGTLSELIDHYKRNPMVETCGTVVHLRQPFNATRI 310
               :..|.|:        :|...|    ..|.|..||    ...|:|....:..:......||..
  Rat  2138 ---TTETTDR--------EDSSKD----PLFLTNEEL----AALPVVRVPPSGKYTGTQLQATIR 2183

  Fly   311 TAAGINARVEQLVKGGFWEEFESLQQDSRDTFSRNEGYKQENRLKNRYRNILPYDHTRVKLLDVE 375
            |..|:      |.:|...:|.|:| |:.:.......|..:|||.||||:||||||.|||.|.|  
  Rat  2184 TLQGL------LDQGIPSKELENL-QELKPLDQCLIGQTKENRRKNRYKNILPYDTTRVPLGD-- 2239

  Fly   376 HSVAGAEYINANYIRLPTDGDLYNMSSSSESLNSSVPSCPACTAAQTQRNCSNCQLQNKTCVQCA 440
                ...||||::||:|.                                               
  Rat  2240 ----EGGYINASFIRIPV----------------------------------------------- 2253

  Fly   441 VKSAILPYSNCATCSRKSDSLSKHKRSESSASSSPSSGSGSGPGSSGTSGVSSVNGPGTPTNLTS 505
                                                          ||...              
  Rat  2254 ----------------------------------------------GTQEF-------------- 2258

  Fly   506 GTAGCLVGLLKRHSNDSSGAVSISMAEREREREREMFKTYIATQGCLLTQQVNTVTDFWNMVWQE 570
                                                  .|||.||.|.|    ||.|||.|||::
  Rat  2259 --------------------------------------VYIACQGPLPT----TVGDFWQMVWEQ 2281

  Fly   571 NTRVIVMTTKEYERGKEKCARYWPDEGRSEQFGHARIQ--CVSENSTSDYTLREF-LVSWRDQPA 632
            |:.||.|.|:|.|..|.||.||||....:....:.|::  .:.......:.:|.. |...:....
  Rat  2282 NSTVIAMMTQEVEGEKIKCQRYWPSILGTTTMANERLRLALLRMQQLKGFVVRVMALEDIQTGEV 2346

  Fly   633 RRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAQAGEKPGPICVHCSAGIGRTGTFIVID 697
            |.|.|.:|..||||..|:.|..:|.|:    :...|:    .:.||:..||||||||:||.|.||
  Rat  2347 RHISHLNFTAWPDHDTPSHPEDLLTFI----SYMRHI----RRSGPVITHCSAGIGRSGTLICID 2403

  Fly   698 MILDQIVRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQTLIARKRAEEQSLQV 762
            ::|..|.:   |.|.||...::.:|.||.|:||||.||.|.|..|.:.:..|    :||||..|.
  Rat  2404 VVLGLISQ---DLEFDISDLVRCMRLQRHGMVQTEGQYVFCYQVVLYVLTHL----QAEEQKAQP 2461

  Fly   763 G 763
            |
  Rat  2462 G 2462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cswNP_477131.1 SH2_C-SH2_SHP_like 211..307 CDD:198185 18/95 (19%)
PTPc-N11_6 352..748 CDD:350392 105/398 (26%)
Ptpn13XP_038948202.1 KIND 3..190 CDD:214801
FERM_F1_PTPN13 564..659 CDD:340715
B41 566..774 CDD:214604
PH-like 770..870 CDD:473070
PDZ1_PTPN13-like 1081..1172 CDD:467285
PTN13_u3 1168..1356 CDD:465189
PDZ2-PTPN13_FRMPD2-like 1354..1445 CDD:467254
PDZ3_PTPN13_FRMPD2-like 1494..1583 CDD:467181
PDZ4_PTPN13-like 1767..1851 CDD:467182
PDZ5_PTPN13-like 1862..1948 CDD:467183
PTPc-N13 2216..2449 CDD:350445 106/398 (27%)
Blue background indicates that the domain is not in the aligned region.

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