DRSC/TRiP Functional Genomics Resources

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Protein Alignment csw and Ptp61F

DIOPT Version :9

Sequence 1:NP_477131.1 Gene:csw / 45278 FlyBaseID:FBgn0000382 Length:945 Species:Drosophila melanogaster
Sequence 2:NP_476687.1 Gene:Ptp61F / 38160 FlyBaseID:FBgn0267487 Length:548 Species:Drosophila melanogaster


Alignment Length:695 Identity:156/695 - (22%)
Similarity:236/695 - (33%) Gaps:276/695 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   312 AAGINARVEQLVKGGFWEEF-----ESLQQDSRD-TFSRNEGYKQENRLKNRYRNILPYDHTRVK 370
            ||.:....|...||..|..|     |:..::::: .||.:|..:..||..||||::.||||:|:.
  Fly    14 AARLQIEAEYKDKGPQWHRFYKEICETCDREAKEKQFSTSESERHTNRGLNRYRDVNPYDHSRIV 78

  Fly   371 LLDVEHSVAGAEYINANYIRLPTDGDLYNMSSSSESLNSSVPSCPACTAAQTQRNCSNCQLQNKT 435
            |     .....:|||||.::|                                            
  Fly    79 L-----KRGSVDYINANLVQL-------------------------------------------- 94

  Fly   436 CVQCAVKSAILPYSNCATCSRKSDSLSKHKRSESSASSSPSSGSGSGPGSSGTSGVSSVNGPGTP 500
                                                                             
  Fly    95 ----------------------------------------------------------------- 94

  Fly   501 TNLTSGTAGCLVGLLKRHSNDSSGAVSISMAEREREREREMFKTYIATQGCLLTQQVNTVTDFWN 565
                                        ..|||:          ||.|||.|    |:||..||.
  Fly    95 ----------------------------ERAERQ----------YILTQGPL----VDTVGHFWL 117

  Fly   566 MVWQENTRVIVMTTKEYERGKEKCARYWPDE---GRSEQFGHAR--IQCVSENSTSDYTLREF-L 624
            |||::.:|.::|..|..|:.:.||..|||:|   .::.:..|.:  ::.|...:..::..|.| |
  Fly   118 MVWEQKSRAVLMLNKLMEKKQIKCHLYWPNEMGADKALKLPHVKLTVELVRLETYQNFVRRWFKL 182

  Fly   625 VSWRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAQAGEKPGPICVHCSAGIGR 689
            .....|.:|.:..:|:..|||.|:|:.|...|.|||.|  |.|  .......||..|||||||||
  Fly   183 TDLETQQSREVMQFHYTTWPDFGIPSSPNAFLKFLQQV--RDS--GCLSRDVGPAVVHCSAGIGR 243

  Fly   690 TGTFIVIDMILDQIVRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQTLIARKR 754
            :|||.::|..|..|.:.|   |.::.:.:..:||.|.||:||..|..|.|.|:...|      |:
  Fly   244 SGTFCLVDCCLVLIDKYG---ECNVSKVLCELRSYRMGLIQTADQLDFSYQAIIEGI------KK 299

  Fly   755 AEEQSLQVGREYTNIKYTGEIGNDSQR-------SPLPPAISSISLVPSKTPLTPTSADLGTGMG 812
            ..:.:.....|..       |.||::.       .||||.:.|::|     ||.|.|..:   :.
  Fly   300 LHDPTFLDAEEPL-------ISNDTETHTLDELPPPLPPRVQSLNL-----PLAPNSGGI---LS 349

  Fly   813 LSMGVGMGVG-----------------NKH---------ASKQQPPLPVVNCNNNNNG------- 844
            |:|......|                 |:|         .|:..|||||...|::::.       
  Fly   350 LNMRAAQANGAESIGKELSKDALNNFINQHDMIHDAEVADSRPLPPLPVRAFNDSDSDEDYLLDD 414

  Fly   845 --------------IGNSGCS--NGGGSSTTSSSNGSSNGN----------------INALLGGI 877
                          |......  ||...:||.......|.|                |:.:.|.:
  Fly   415 DDEDDTDEDEEYETINEHDADPVNGHVPATTQPHADDVNANNEKPAVPVDEQHKANGIDPIPGQL 479

  Fly   878 GLGLGGNM--RKSNFYSDSLKQ------QQQREEQAPAGAGKMQQ 914
            .......:  ||.|.|..||:|      ::|||.:....|.|.::
  Fly   480 PASPENELKRRKRNEYQASLEQKVNDMKRKQRENEDKQLAAKKRR 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cswNP_477131.1 SH2_C-SH2_SHP_like 211..307 CDD:198185
PTPc 326..744 CDD:214550 102/429 (24%)
PTPc 543..743 CDD:238006 75/205 (37%)
Ptp61FNP_476687.1 PTPc 34..295 CDD:214550 100/423 (24%)
PTPc 62..295 CDD:238006 94/395 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45443547
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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