DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment csw and Ptprf

DIOPT Version :10

Sequence 1:NP_477131.1 Gene:csw / 45278 FlyBaseID:FBgn0000382 Length:945 Species:Drosophila melanogaster
Sequence 2:XP_038966082.1 Gene:Ptprf / 360406 RGDID:3453 Length:1924 Species:Rattus norvegicus


Alignment Length:865 Identity:191/865 - (22%)
Similarity:303/865 - (35%) Gaps:308/865 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 VTPPTETPEAQEPACKNCMTHDELAQIIKGVAKGADAQRNRDNRLQRRR---------------- 137
            :.|...|||..           ||.::::.:.:|.:.||.|..:.:|.:                
  Rat  1153 LAPRWSTPEEL-----------ELDELLEAIEQGEEKQRRRRRQAERLKPYVAAQVDELPETFTL 1206

  Fly   138 -----------RPLSAQPS----------------AAASASTSTESLHRLTPSPQASYPATPTSW 175
                       ||||...|                ..||:..|.|.:.::||:.|...|  ...|
  Rat  1207 GDKKNYRGFYNRPLSPDLSYQCFVLASLKEPMDQKRYASSPYSDEIVVQVTPAQQQEEP--EMLW 1269

  Fly   176 TATPPQFPAAFGGASCSNSTLSLLATMRVQLHGYTWFHGNLSGKEAEKLILERGKNGSFLVRESQ 240
            ...|               .|:::..:.:.:               ..|:.:|.:..|...::.|
  Rat  1270 VTGP---------------VLAVILIILIVI---------------AILLFKRKRTHSPSSKDEQ 1304

  Fly   241 SKPGDFVLSVRTDDKVTHVMIRWQDKKYDVGGGESFGTLSELIDHYKRNPMVETCGTVVHLRQPF 305
            |......|...:.|.|....:.:|...   ....|...:|.:.|| ...|:.:....:..|:   
  Rat  1305 SIGLKDSLLAHSSDPVEMRRLNYQTPG---SSAPSCPNISSMRDH-PPIPITDLADNIERLK--- 1362

  Fly   306 NATRITAAGINARVEQLVKGGFWEEFESLQQDSRDTFSRNEGYKQENRLKNRYRNILPYDHTRVK 370
                 ...|:.          |.:|:||:  |....|:......:.|:.||||.|::.|||:||.
  Rat  1363 -----ANDGLK----------FSQEYESI--DPGQQFTWENSNSEVNKPKNRYANVIAYDHSRVL 1410

  Fly   371 LLDVEHSVAGAEYINANYI--------------RLP-TDGDLYNM-------------------- 400
            |..:: .|.|::|||||||              .|| |.||.:.|                    
  Rat  1411 LTSID-GVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSR 1474

  Fly   401 ----------------------------------------SSSSESL-----------NSSVPSC 414
                                                    |.|||..           :..||..
  Rat  1475 VKCDQYWPARGTETYGLIQVTLVDTVELATYTMRTFALHKSGSSEKRELRQFQFMAWPDHGVPEY 1539

  Fly   415 PA-----------------------CTAAQTQRNC---SNCQLQ------------NKTCVQCA- 440
            |.                       |:|...:..|   .:..|:            :.||::.. 
  Rat  1540 PTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQR 1604

  Fly   441 ------------VKSAILPYSNCATCSRKSDSLSKHKRSESSASSSPSSGSGSGPGSS------- 486
                        :..|:|..:.|......:.:|..|.:......          ||.|       
  Rat  1605 NYMVQTEDQYVFIHEALLEAAMCGHTEVLARNLYAHIQKLGQVP----------PGESVTAMELE 1659

  Fly   487 ---------GTSGVSSVNGPGT----------PTNLTSGTAGCLVGLLKRHSNDSSGAVSISMAE 532
                     .||...|.|.|..          |..||.      |.|......:.|..::.|..:
  Rat  1660 FKLLANSKAHTSRFISANLPCNKFKNRLVNIMPYELTR------VCLQPIRGVEGSDYINASFLD 1718

  Fly   533 REREREREMFKTYIATQGCLLTQQVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEG 597
            ..|::     |.||||||.|    ..:..|||.|:|:.|:.:|||.||..|.|:|||.:|||.| 
  Rat  1719 GYRQQ-----KAYIATQGPL----AESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAE- 1773

  Fly   598 RSEQFGHARIQCVSENSTSDYTLREFLVS-WRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQD 661
            ||.::.:..:..::|.:...|.||||.|: .||..:|.|..:.|..||:.|||......::|:..
  Rat  1774 RSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQ 1838

  Fly   662 VNTRQSHLAQAGEKPGPICVHCSAGIGRTGTFIVIDMILDQIVRNGLDTEIDIQRTIQMVRSQRS 726
            |:..:....|    .|||.||||||:||||.||.:.::|:::...|:   :|:.:|::.:|:||.
  Rat  1839 VHKTKEQFGQ----DGPITVHCSAGVGRTGVFITLSIVLERMRYEGV---VDMFQTVKTLRTQRP 1896

  Fly   727 GLVQTEAQYKFVYYAVQHYI 746
            .:||||.||:..|.|...|:
  Rat  1897 AMVQTEDQYQLCYRAALEYL 1916

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cswNP_477131.1 SH2_C-SH2_SHP_like 211..307 CDD:198185 15/95 (16%)
PTPc-N11_6 352..748 CDD:350392 142/559 (25%)
PtprfXP_038966082.1 I-set 33..124 CDD:400151
Ig strand B 50..54 CDD:409353
Ig strand C 63..67 CDD:409353
Ig strand E 86..93 CDD:409353
Ig strand F 104..109 CDD:409353
Ig strand G 117..120 CDD:409353
IgI_2_RPTP_IIa_LAR_like 136..232 CDD:409400
Ig strand A 136..138 CDD:409400
Ig strand A' 143..147 CDD:409400
Ig strand B 150..159 CDD:409400
Ig strand C 164..170 CDD:409400
Ig strand C' 172..174 CDD:409400
Ig strand D 183..187 CDD:409400
Ig strand E 196..201 CDD:409400
Ig strand F 210..217 CDD:409400
Ig strand G 220..231 CDD:409400
IgI_3_RPTP_IIa_LAR_like 241..322 CDD:409401
Ig strand A 241..243 CDD:409401
Ig strand A' 247..251 CDD:409401
Ig strand B 254..262 CDD:409401
Ig strand C 267..273 CDD:409401
Ig strand C' 275..277 CDD:409401
Ig strand D 280..284 CDD:409401
Ig strand E 289..294 CDD:409401
FN3 294..718 CDD:442628
Ig strand F 301..308 CDD:409401
Ig strand G 312..321 CDD:409401
FN3 598..1065 CDD:442628
PTP_DSP_cys 1352..1627 CDD:475123 50/295 (17%)
R-PTP-F-2 1629..1919 CDD:350477 99/321 (31%)
Blue background indicates that the domain is not in the aligned region.

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