DRSC/TRiP Functional Genomics Resources

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Protein Alignment csw and soem-1

DIOPT Version :10

Sequence 1:NP_477131.1 Gene:csw / 45278 FlyBaseID:FBgn0000382 Length:945 Species:Drosophila melanogaster
Sequence 2:NP_001021833.1 Gene:soem-1 / 3565861 WormBaseID:WBGene00013603 Length:190 Species:Caenorhabditis elegans


Alignment Length:244 Identity:52/244 - (21%)
Similarity:78/244 - (31%) Gaps:90/244 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 AHYGSKGRRSE------ERERSGKFKASKGR-------KAKVTPPTETPEAQEPACKNCMTHDEL 112
            |.|||.....:      .|..|.:|..:..|       .|||     :|......|.:....::|
 Worm     7 ADYGSSEGHYDTPWEFLARPNSVRFSTADVRLSTSAAGDAKV-----SPHGSPSLCSSSSFVNQL 66

  Fly   113 AQIIKGVAKGADAQRNRDNRLQRRRRPLSAQPSAAASASTSTESLHRLTPSPQASYPATPTSWTA 177
            .||..   ...||:|.......:||||                                      
 Worm    67 VQIGN---SAVDARRKVPRDESKRRRP-------------------------------------- 90

  Fly   178 TPPQFPAAFGGASCSNSTLSLLATMRVQLHGYTWFHGNLSGKEAEKLILERGKNGSFLVRESQSK 242
                          |:|.:              :...|::..||||. ||....|.:|:|.... 
 Worm    91 --------------SDSEI--------------YMEQNMNRVEAEKR-LENRNLGDYLLRSRGE- 125

  Fly   243 PGDFVLSVRTDDKVTHVMIRWQDKKYDVGGGESFGTLSELIDHYKRNPM 291
             |...||:|....|.|:.|.|..:|:.:|.|..|.::|..|..|:|:|:
 Worm   126 -GSAALSLRATKGVVHIKIEWNGEKWVIGEGPLFRSISSAISFYRRHPL 173

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cswNP_477131.1 SH2_C-SH2_SHP_like 211..307 CDD:198185 27/81 (33%)
PTPc-N11_6 352..748 CDD:350392
soem-1NP_001021833.1 SH2 100..173 CDD:472789 26/75 (35%)
Blue background indicates that the domain is not in the aligned region.

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