DRSC/TRiP Functional Genomics Resources

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Protein Alignment csw and ptpn11a

DIOPT Version :9

Sequence 1:NP_477131.1 Gene:csw / 45278 FlyBaseID:FBgn0000382 Length:945 Species:Drosophila melanogaster
Sequence 2:NP_956140.1 Gene:ptpn11a / 333979 ZFINID:ZDB-GENE-030131-5911 Length:594 Species:Danio rerio


Alignment Length:715 Identity:291/715 - (40%)
Similarity:367/715 - (51%) Gaps:229/715 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 LTPSPQASYPATPTSWTATPPQFPAA---------------------FGGASCSNSTLSLLATMR 203
            ||.....|:.|.|:.  :.|..|..:                     :||...  :||:.|....
Zfish    21 LTRGVDGSFLARPSK--SNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKF--ATLAELVQYY 81

  Fly   204 VQLHGY-----------------------TWFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGD 245
            ::.||.                       .||||:|||:|||||:.|:|||||||||||||.|||
Zfish    82 MEHHGQLKEKNGDVIELKYPLNCADPTSERWFHGHLSGREAEKLLTEKGKNGSFLVRESQSHPGD 146

  Fly   246 FVLSVRTDD----------KVTHVMIRWQ-DKKYDVGGGESFGTLSELIDHYKRNPMVETCGTVV 299
            |||||||.|          ||||||||.| |.||||||||.|.:|::|::|||:||||||.|||:
Zfish   147 FVLSVRTGDDKTDTSEGKPKVTHVMIRCQHDLKYDVGGGEKFDSLTDLVEHYKKNPMVETLGTVL 211

  Fly   300 HLRQPFNATRITAAGINARVEQL---------VKGGFWEEFESL-QQDSRDTFSRNEGYKQENRL 354
            .|:||.|.|||.||.|.:||.:|         ||.|||||||:| ||:.:..:||.||.:.||:.
Zfish   212 QLKQPLNTTRINAAEIESRVRELSKLAEATDKVKQGFWEEFETLQQQECKLLYSRKEGQRPENKN 276

  Fly   355 KNRYRNILPYDHTRVKLLDVEHSVAGAEYINANYIRLPTDGDLYNMSSSSESLNSSVPSCPACTA 419
            ||||:||||:|||||.|.|.:.:..|::|||||.| :|.:                         
Zfish   277 KNRYKNILPFDHTRVVLTDGDVNEQGSDYINANLI-MPDN------------------------- 315

  Fly   420 AQTQRNCSNCQLQNKTCVQCAVKSAILPYSNCATCSRKSDSLSKHKRSESSASSSPSSGSGSGPG 484
                                               ..||:: ||.|||                 
Zfish   316 -----------------------------------EAKSNN-SKLKRS----------------- 327

  Fly   485 SSGTSGVSSVNGPGTPTNLTSGTAGCLVGLLKRHSNDSSGAVSISMAEREREREREMFKTYIATQ 549
                                                                        |||||
Zfish   328 ------------------------------------------------------------YIATQ 332

  Fly   550 GCLLTQQVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSEQFGHARIQCVSENS 614
            |||    .||::|||.||:|||:|||||||||.||||.||.:||||....:::|..|::.|.|..
Zfish   333 GCL----QNTISDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDVSALKEYGAMRVRNVKETM 393

  Fly   615 TSDYTLREFLVS--WRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAQAGEKPG 677
            ..||.|||..:|  .:....|.::.|||:.|||||||.|||.||:||::|..:|..:..|    |
Zfish   394 AHDYILRELKLSKVGQGNTERTVWQYHFRAWPDHGVPGDPGGVLDFLEEVKLKQEGITGA----G 454

  Fly   678 PICVHCSAGIGRTGTFIVIDMILDQIVRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAV 742
            ||.|||||||||||||||||:::|.|...|:|.:||:.:|||||||||||:|||||||:|:|.||
Zfish   455 PIVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYRFIYMAV 519

  Fly   743 QHYIQTLIARKRAEEQSLQVGREYTNIKYTGEIGNDSQRSPLPPAISSISLVPSKTPLTPTSADL 807
            ||||:||..|...|::|...|||||||||:....:...:|||||.          || |||.||:
Zfish   520 QHYIETLQRRIEEEQKSKIKGREYTNIKYSLSDLSGGDQSPLPPC----------TP-TPTCADM 573

  Fly   808  807
            Zfish   574  573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cswNP_477131.1 SH2_C-SH2_SHP_like 211..307 CDD:198185 73/106 (69%)
PTPc 326..744 CDD:214550 162/420 (39%)
PTPc 543..743 CDD:238006 115/201 (57%)
ptpn11aNP_956140.1 SH2_N-SH2_SHP_like 5..103 CDD:198203 14/85 (16%)
SH2_C-SH2_SHP_like 111..219 CDD:198185 73/107 (68%)
PTPc 247..521 CDD:214550 162/420 (39%)
PTPc 277..520 CDD:238006 145/389 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 240 1.000 Domainoid score I2210
eggNOG 1 0.900 - - E2759_KOG0790
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2122
Inparanoid 1 1.050 651 1.000 Inparanoid score I774
OMA 1 1.010 - - QHG52365
OrthoDB 1 1.010 - - D132255at33208
OrthoFinder 1 1.000 - - FOG0002703
OrthoInspector 1 1.000 - - otm25867
orthoMCL 1 0.900 - - OOG6_102716
Panther 1 1.100 - - O PTHR46257
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1404
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.840

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