DRSC/TRiP Functional Genomics Resources

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Protein Alignment csw and Ptp4E

DIOPT Version :9

Sequence 1:NP_477131.1 Gene:csw / 45278 FlyBaseID:FBgn0000382 Length:945 Species:Drosophila melanogaster
Sequence 2:NP_001162669.1 Gene:Ptp4E / 31425 FlyBaseID:FBgn0004368 Length:1767 Species:Drosophila melanogaster


Alignment Length:646 Identity:150/646 - (23%)
Similarity:238/646 - (36%) Gaps:262/646 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   299 VHLRQPFNATRITAAGINARVEQLVKGGFWEEFESLQQDSRD---TFSRNEGYKQENRLKNRYRN 360
            ||::......||.:|..:.|        |.||||.|:...||   :|:.    ...||.|||:.|
  Fly  1309 VHVKDFSEHYRIMSADSDFR--------FSEEFEELKHVGRDQACSFAN----LPCNRPKNRFTN 1361

  Fly   361 ILPYDHTRVKLLDVEHSVAGAEYINANYIRLPTDGDLYNMSSSSESLNSSVPSCPACTAAQTQRN 425
            ||||||:|.||..|:.. .|::||||||:                                    
  Fly  1362 ILPYDHSRFKLQPVDDD-DGSDYINANYM------------------------------------ 1389

  Fly   426 CSNCQLQNKTCVQCAVKSAILPYSNCATCSRKSDSLSKHKRSESSASSSPSSGSGSGPGSSGTSG 490
                                                                     ||.     
  Fly  1390 ---------------------------------------------------------PGH----- 1392

  Fly   491 VSSVNGPGTPTNLTSGTAGCLVGLLKRHSNDSSGAVSISMAEREREREREMFKTYIATQGCLLTQ 555
                |.|                                             :.:|.|||.|   
  Fly  1393 ----NSP---------------------------------------------REFIVTQGPL--- 1405

  Fly   556 QVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSEQFGHARIQCVSENSTSDYTL 620
             .:|..:||.|.|:.|:|.|||.|:.:|:|:|||.:|||.:..:..:|..::|.:.:....|:::
  Fly  1406 -HSTREEFWRMCWESNSRAIVMLTRCFEKGREKCDQYWPVDRVAMFYGDIKVQLIIDTHYHDWSI 1469

  Fly   621 REFLVSWRDQPARRIFHYHFQVWPDHGVPADPGCVLNFL---QDVNTRQSHLAQAGEKPGPICVH 682
            .||:|| |:..:|.:.|:||..|||.|||..|..::.|:   :||         .|....||.||
  Fly  1470 SEFMVS-RNCESRIMRHFHFTTWPDFGVPEPPQSLVRFVRAFRDV---------IGTDMRPIIVH 1524

  Fly   683 CSAGIGRTGTFIVIDMILDQIVRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQ 747
            ||||:||:||||.:|.||..|.::..   :||...:..:|.:|..:||||.||..::       |
  Fly  1525 CSAGVGRSGTFIALDRILQHIHKSDY---VDIFGIVFAMRKERVFMVQTEQQYVCIH-------Q 1579

  Fly   748 TLIARKRAEE----QSLQV----GREYTNIKYTGEIGNDSQRSPLPPAISSISLVPSKTPLT--- 801
            .|:|....:|    .||::    |.|.|.|..        :|.|.    :.:..:|.:..|.   
  Fly  1580 CLLAVLEGKEHLLADSLELHANDGYEVTKIYL--------ERQPQ----TKMGTLPIRASLAMAE 1632

  Fly   802 PTSADLGTGMGLSMGVGMGVGNK-----HASKQQPPLPVV--------------NCNNNNNGIGN 847
            ...|||.|             ||     ...:||..|.:.              ..:::::....
  Fly  1633 KLDADLMT-------------NKDEDEDQEQQQQQQLQLATEVKPKGSNDDEEDEEDDDDDDDDQ 1684

  Fly   848 SGCSNGGGSSTTSSSNGSSNGNINALLGGIGLGLGGNMRKSNFYSDSLKQQQQREEQAPAG 908
            ...:|...::.:|:|..||..:::.:|                 .:::::.:|.:|:..||
  Fly  1685 QPLNNETTATLSSASCSSSTHDVHVVL-----------------QEAIEKPKQEQERICAG 1728

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cswNP_477131.1 SH2_C-SH2_SHP_like 211..307 CDD:198185 2/7 (29%)
PTPc 326..744 CDD:214550 111/423 (26%)
PTPc 543..743 CDD:238006 75/202 (37%)
Ptp4ENP_001162669.1 FN3 151..242 CDD:238020
fn3 247..328 CDD:278470
fn3 343..417 CDD:278470
fn3 443..525 CDD:278470
FN3 548..611 CDD:238020
FN3 620..706 CDD:238020
fn3 708..796 CDD:278470
fn3 824..886 CDD:278470
fn3 902..978 CDD:278470
fn3 1013..1092 CDD:278470
UP_III_II 1106..>1248 CDD:297589
PTPc 1329..1582 CDD:214550 112/428 (26%)
PTPc 1355..1582 CDD:238006 101/398 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45443514
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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