DRSC/TRiP Functional Genomics Resources

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Protein Alignment csw and Ptpn18

DIOPT Version :10

Sequence 1:NP_477131.1 Gene:csw / 45278 FlyBaseID:FBgn0000382 Length:945 Species:Drosophila melanogaster
Sequence 2:XP_063122948.1 Gene:Ptpn18 / 301333 RGDID:1311586 Length:507 Species:Rattus norvegicus


Alignment Length:608 Identity:135/608 - (22%)
Similarity:206/608 - (33%) Gaps:217/608 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   317 ARVEQLVKGGFWEEFESLQQDSRD-------------------------TFSRNEGYKQENRLKN 356
            :|...||: .|.|     ||::||                         ..|...|.:|.|..||
  Rat     2 SRQSDLVR-SFLE-----QQEARDHREGAILAREFSDIKARSVAWKTEGVCSTKAGSQQGNSKKN 60

  Fly   357 RYRNILPYDHTRVKLLDVEHSVAGAEYINANYIRLPTDGDLYNMSSSSESLNSSVPSCPACTAAQ 421
            ||::::|||.||| :|.:.......:|||||:||                               
  Rat    61 RYKDVVPYDETRV-ILSLLQEEGHGDYINANFIR------------------------------- 93

  Fly   422 TQRNCSNCQLQNKTCVQCAVKSAILPYSNCATCSRKSDSLSKHKRSESSASSSPSSGSGSGPGSS 486
                                                                             
  Rat    94 ----------------------------------------------------------------- 93

  Fly   487 GTSGVSSVNGPGTPTNLTSGTAGCLVGLLKRHSNDSSGAVSISMAEREREREREMFKTYIATQGC 551
            ||.|                                                   .:.||||||.
  Rat    94 GTDG---------------------------------------------------SQAYIATQGP 107

  Fly   552 LLTQQVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSEQFGHARIQCVSENS-T 615
            |    .:|:.|||.:||:...:||:|..:|.|.|:.||.|||..|....|.|...|....|.: |
  Rat   108 L----PHTLLDFWRLVWEFGVKVILMACQETENGRRKCERYWAQEREPLQAGPFCITLTKETALT 168

  Fly   616 SDYTLREFLVSWRDQP-----ARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAQAGEK 675
            :|.|||...|:::..|     :|.:....:..|||||||:....:|..:::....|      |..
  Rat   169 ADITLRTLQVTFQKVPKGQKESRPVHQLQYMSWPDHGVPSSSDHILTMVEEARCLQ------GLG 227

  Fly   676 PGPICVHCSAGIGRTGTFIVIDMILDQIVRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYY 740
            |||:|||||||.||||....:|.:...::...:.....:...:..:|.||...||||.||:|:|:
  Rat   228 PGPLCVHCSAGCGRTGVLCAVDYVRQLLLTQTIPPNFSLFEVVLEMRKQRPAAVQTEEQYRFLYH 292

  Fly   741 AVQHYIQTLIARKRAEEQSLQVGR-----EYTNIKYTGEIGNDSQRSPLPPAISSISLV-PSKTP 799
            .|.......:.......|:|:..|     :.::::.:..:...|:  ||...:.|||:. |...|
  Rat   293 TVAQLFSRTLQNNSPLYQNLKENRAPICKDSSSLRTSSALPATSR--PLGGVLRSISVPGPPTLP 355

  Fly   800 LTPT-------SADLGTGMGLSM--GVGMGVGNKHASKQQPPLPVVNCNNNNNGIGNSGCSNGGG 855
            :..|       .|..|||.|...  .....:.::.|.:.|.|:     ::..|..|.:.......
  Rat   356 MADTYAVVQKRGAPAGTGPGTRAPNSTDTPIYSQVAPRIQRPV-----SHTENAQGTTALGRVPA 415

  Fly   856 SSTTSSSNGSSNGNINALLGGIG 878
            ....|..:........|..||:|
  Rat   416 DENPSGPDAYEEVTDGAQTGGLG 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cswNP_477131.1 SH2_C-SH2_SHP_like 211..307 CDD:198185
PTPc-N11_6 352..748 CDD:350392 96/401 (24%)
Ptpn18XP_063122948.1 None
Blue background indicates that the domain is not in the aligned region.

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