DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment csw and T27A3.5

DIOPT Version :10

Sequence 1:NP_477131.1 Gene:csw / 45278 FlyBaseID:FBgn0000382 Length:945 Species:Drosophila melanogaster
Sequence 2:NP_491761.3 Gene:T27A3.5 / 188965 WormBaseID:WBGene00020841 Length:355 Species:Caenorhabditis elegans


Alignment Length:215 Identity:64/215 - (29%)
Similarity:102/215 - (47%) Gaps:28/215 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   545 YIATQGCLLTQQVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSEQF---GHAR 606
            :|.|||    ....||.||:.::|||....:||.....|.||:||.:|||:....:..   |...
 Worm   141 FICTQG----PTEKTVDDFYRLIWQEKAPCVVMLCNIMECGKKKCEQYWPETADGQMILMDGKLT 201

  Fly   607 IQCV--SENSTSDYTLREFLVSWRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHL 669
            ::..  ::....:..|.:..|......:....|:.::.|||.|||..|..|...|..:.|     
 Worm   202 VKIAEPAKEVEQNILLMKITVIDDKGTSHNFEHWQWKAWPDRGVPELPMAVFRLLIRLKT----- 261

  Fly   670 AQAGEKPGPICVHCSAGIGRTGTFIVIDMILDQIVRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQ 734
                  ..||.|||||||||||:.:.:::.|   |:.....::.::..::.:|:||.|.|||:||
 Worm   262 ------ASPIVVHCSAGIGRTGSIVGLEIAL---VKFCAGEKVVLKDIVKEIRNQRHGSVQTDAQ 317

  Fly   735 YKFVYYAVQHYIQTLIARKR 754
            |.|:     |.:...:|..|
 Worm   318 YLFM-----HRVLLALAENR 332

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cswNP_477131.1 SH2_C-SH2_SHP_like 211..307 CDD:198185
PTPc-N11_6 352..748 CDD:350392 62/207 (30%)
T27A3.5NP_491761.3 PTPc 73..326 CDD:214550 62/207 (30%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.