DRSC/TRiP Functional Genomics Resources

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Protein Alignment csw and C17H12.3

DIOPT Version :9

Sequence 1:NP_477131.1 Gene:csw / 45278 FlyBaseID:FBgn0000382 Length:945 Species:Drosophila melanogaster
Sequence 2:NP_001379692.1 Gene:C17H12.3 / 177443 WormBaseID:WBGene00015929 Length:374 Species:Caenorhabditis elegans


Alignment Length:211 Identity:77/211 - (36%)
Similarity:110/211 - (52%) Gaps:27/211 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   543 KTYIATQGCLLTQQVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWP---DEGRSEQFGH 604
            |.:|.|||.|    .:||.|||.|:.|:....|||..|..|.||.|||:|||   .| :.|..|.
 Worm   149 KRFICTQGPL----DHTVDDFWWMIVQQKVEQIVMLCKTIETGKYKCAQYWPLAMGE-KKEVKGG 208

  Fly   605 ARIQCVSENSTSD----YTLREFLVSWRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTR 665
            ..::.||.....|    ..:....||:.|| ...:.|.|:..|||.|||.   |.|..|:.::  
 Worm   209 IVVENVSGTKPMDRDAEIQITTLQVSFGDQ-KMSVRHLHWSDWPDRGVPP---CKLTSLELLS-- 267

  Fly   666 QSHLAQAGEKPGPICVHCSAGIGRTGTFIVIDMILDQIVRNGLDTEI-DIQRTIQMVRSQRSGLV 729
                |..|.:. ||.||||||||||||.:.|:.||::|..|.....: |:   ::.:|.||:..:
 Worm   268 ----AVRGSRV-PIVVHCSAGIGRTGTIVAIEYILERIAENKQCPPMPDL---VKSLRDQRAYSI 324

  Fly   730 QTEAQYKFVYYAVQHY 745
            ||:.||.:::..:.:|
 Worm   325 QTDMQYLYIHRVMLNY 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cswNP_477131.1 SH2_C-SH2_SHP_like 211..307 CDD:198185
PTPc 326..744 CDD:214550 76/208 (37%)
PTPc 543..743 CDD:238006 76/207 (37%)
C17H12.3NP_001379692.1 PTPc 77..339 CDD:214550 76/208 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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